journal article·2021-07-02Open access

VBM-Based Alzheimer’s Disease Detection from the Region of Interest of T1 MRI with Supportive Gaussian Smoothing and a Bayesian Regularized Neural Network

Bijen Khagi, Kun Ho Lee, Kyu Yeong Choi, Jang Jae Lee, Goo-Rak Kwon, Hee-Deok Yang

Applied Sciences· Volume 11· Issue 13

Abstract

This paper presents an efficient computer-aided diagnosis (CAD) approach for the automatic detection of Alzheimer’s disease in patients’ T1 MRI scans using the voxel-based morphometry (VBM) analysis of the region of interest (ROI) in the brain. The idea is to generate a normal distribution of feature vectors from ROIs then later use for classification via Bayesian regularized neural network (BR-NN). The first dataset consists of the magnetic resonance imaging (MRI) of 74 Alzheimer’s disease (AD), 42 mild cognitive impairment (MCI), and 74 control normal (CN) from the ADNI1 dataset. The other dataset consists of the MRI of 42 Alzheimer’s disease dementia (ADD), 42 normal controls (NCs), and 39 MCI due to AD (mAD) from our GARD2 database. We aim to create a generalized network to distinguish normal individuals (CN/NC) from dementia patients AD/ADD and MCI/mAD. Our performance relies on our feature extraction process and data smoothing process. Here the key process is to generate a Statistical Parametric Mapping (SPM) t-map image from VBM analysis and obtain the region of interest (ROI) that shows the optimistic result after two-sample t-tests for a smaller value of p < 0.001(AD vs. CN). The result was overwhelming for the distinction between AD/ADD and CN/NC, thus validating our idea for discriminative MRI features. Further, we compared our performance with other recent state-of-the-art methods, and it is comparatively better in many cases. We have experimented with two datasets to validate the process. To validate the network generalization, BR-NN is trained from 70% of the ADNI dataset and tested on 30% of the ADNI, 100% of the GARD dataset, and vice versa. Additionally, we identified the brain anatomical ROIs that may be relatively responsible for brain atrophy during the AD diagnosis.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Dementia and Cognitive Impairment Research · Brain Tumor Detection and Classification · Neurological Disease Mechanisms and Treatments

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

School of Information Communication Engineering, Chosun University, 309 Pilmun-Daero, Dong-Gu, Gwangju 61452, Korea

Department of Biomedical Science, Chosun University, Gwangju 61452, Korea

Aging Neuroscience Research Group, Korea Brain Research Institute, Daegu 41062, Korea

Gwangju Alzheimer’s Disease and Related Dementia Cohort Research Center, Chosun University, Gwangju 61452, Korea

Department of Computer Engineering, Chosun University, 309 Pilmun-Daero, Dong-Gu, Gwangju 61452, Korea

Funding

NRF · Ministry of Science and ICT

References (53)

Show source-provided references
1. Machine Learning Classification Combining Multiple Features of a Hyper-Network of fMRI Data in Alzheimer’s Disease10.3389/fnins.2017.00615 ↗
2. Automatic classification of patients with Alzheimer’s disease from structural MRI: A comparison of ten methods using the ADNI database10.1016/j.neuroimage.2010.06.013 ↗
3. Voxel-Based Morphometry—The Methods10.1006/nimg.2000.0582 ↗
4. Neurocognitive disorder detection based on feature vectors extracted from VBM analysis of structural MRI10.1016/j.compbiomed.2011.05.010 ↗
5. A voxel-based morphometry study of temporal lobe gray matter reductions in Alzheimer’s disease10.1016/S0197-4580(02)00084-2 ↗
6. Detection of grey matter loss in mild Alzheimer’s disease with voxel based Morphometry Journal of Neurology10.1136/jnnp.73.6.657 ↗
7. Probability distribution function-based classification of structural MRI for the detection of Alzheimer’s disease10.1016/j.compbiomed.2015.07.006 ↗
8. Structural MRI-based detection of Alzheimer’s disease using feature ranking and classification error10.1016/j.cmpb.2016.09.019 ↗
9. Diagnosis of Alzheimer’s disease using dual-tree complex wavelet transform, PCA, and feed-forward neural network10.1155/2017/9060124 ↗
10. Single slice based detection for Alzheimer’s disease via wavelet entropy and multilayer perceptron trained by biogeography-based optimization10.1007/s11042-016-4222-4 ↗
11. Classification of Alzheimer disease based on structural magnetic resonance imaging by kernel uspport vector machine decision tree10.2528/PIER13121310 ↗
12. Magnetic resonance brain image classification by an improved artificial bee colony algorithm10.2528/PIER11031709 ↗
13. An improved machine learning technique based on downsized KPCA for Alzheimer’s disease classification10.1002/ima.22304 ↗
14. Hierarchical feature representation and multimodal fusion with deep learning for AD/MCI diagnosis10.1016/j.neuroimage.2014.06.077 ↗
15. Deep learning reveals Alzheimer’s disease onset in MCI subjects: Results from an international challenge10.1016/j.jneumeth.2017.12.011 ↗
16. Comparative analysis of Alzheimer’s disease classification by CDR level using CNN, feature selection, and machine-learning techniques10.1002/ima.22316 ↗
17. Shuai, B., Zuo, Z., Wang, B., and Wang, G. (2016, January 27–30). Dag-recurrent neural networks for scene labeling. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, Las Vegas, NV, USA.10.1109/CVPR.2016.394 ↗
18. DrsNet: Dual-resolution semantic segmentation with rare class-oriented superpixel prior10.1007/s11042-020-09691-y ↗
19. Alzheimer’s disease markers from structural MRI and FDG-PET brain images10.1140/epjp/i2012-12135-6 ↗
20. Automated atrophy assessment for Alzheimer’s disease diagnosis from brain MRI images10.1016/j.mri.2019.06.019 ↗
21. The progression of cognitive deterioration and regional cerebral blood flow patterns in Alzheimer’s disease: A longitudinal SPECT study10.1016/j.jns.2009.10.022 ↗
22. Multi-region analysis of longitudinal FDG-PET for the classification of Alzheimer’s disease10.1016/j.neuroimage.2011.12.071 ↗
23. MEG spectral profile in Alzheimer’s disease and mild cognitive impairment10.1016/j.clinph.2005.10.017 ↗
24. Altered functional connectivity in early Alzheimer’s disease: A resting-state fMRI study10.1002/hbm.20324 ↗
25. (2021, February 10). Available online: https://ida.loni.usc.edu/home/projectPage.jsp?project=ADNI&page=HOME&subPage=OVERVIEW_PR.
26. Hajnal, J.V., Hill, D.L.G., and Hawkes, D.J. (2001). Medical Image Registration, CRC Press.10.1201/9781420042474 ↗
27. Reliability in multi-site structural MRI studies: Effects of gradient non-linearity correction on phantom and human data10.1016/j.neuroimage.2005.09.046 ↗
28. Compensation for surface coil sensitivity variation in magnetic resonance imaging10.1016/0730-725X(88)90401-8 ↗
29. The Alzheimer’s disease neuroimaging initiative (ADNI): MRI methods
30. Are T2-weighted images more useful than T1-weighted contrast-enhanced images in assessment of postoperative sella and parasellar region?
31. A fast diffeomorphic image registration algorithm10.1016/j.neuroimage.2007.07.007 ↗
32. A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM)10.1098/rstb.2001.0915 ↗
33. Introduction to Random Field Theory
34. Automated Anatomical Labeling of Activations in SPM Using a Macroscopic Anatomical Parcellation of the MNI MRI Single-Subject Brain10.1006/nimg.2001.0978 ↗
35. Brett, M., Anton, J.L., Valabregue, R., and Poline, J.B. (2002, January 2–6). Region of interest analysis using an SPM toolbox [abstract]. Proceedings of the 8th International Conference on Functional Mapping of the Human Brain, Sendai, Japan.
36. Bayesian interpolation10.1162/neco.1992.4.3.415 ↗
37. Gauss-Newton approximation to Bayesian learning
38. Hagan, M.T., Demuth, H.B., Beale, M.H., and De Jesús, O. (1996). Neural Network Design, Pws Pub.
39. Nguyen, D., and Widrow, B. (1990, January 17–21). Improving the learning speed of 2-layer neural networks by choosing initial values of the adaptive weights. Proceedings of the 1990 IJCNN International Joint Conference on Neural Networks, San Diego, CA, USA.10.1109/IJCNN.1990.137819 ↗
40. Accelerating the convergence of the back-propagation method10.1007/BF00332914 ↗
41. Baert, A.L., Günther, R.W., and von Schulthess, G.K. (2012). Interventional Magnetic Resonance Imaging, Springer Science & Business Media.
42. Multiplex networks for early diagnosis of Alzheimer’s disease10.3389/fnagi.2018.00365 ↗
43. (2020, September 01). Available online: https://courses.lumenlearning.com/wsu-sandbox/chapter/parts-of-the-brain-involved-with-memory/.
44. Human recognition memory: A cognitive neuroscience perspective10.1016/S1364-6613(03)00131-1 ↗
45. Khagi, B., and Kwon, G.R. (2020). 3D CNN Design for the Classification of Alzheimer’s Disease Using Brain MRI and PET, IEEE Access.10.1109/ACCESS.2020.3040486 ↗
46. Multimodal classification of Alzheimer’s disease and mild cognitive impairment10.1016/j.neuroimage.2011.01.008 ↗
47. Combining MRI and CSF measures for classification of Alzheimer’s disease and prediction of mild cognitive impairment conversion10.1016/j.neuroimage.2012.04.056 ↗
48. Different multivariate techniques for automated classification of MRI data in Alzheimer’s disease and mild cognitive impairment10.1016/j.pscychresns.2012.11.005 ↗
49. (2020, February 10). Available online: https://www.oasis-brains.org/#data.
50. An optimal decisional space for the classification of Alzheimer’s disease and mild cognitive impairment10.1109/TBME.2014.2310709 ↗
51. A lattice computing approach to Alzheimer’s disease computer-assisted diagnosis based on MRI data10.1016/j.neucom.2014.02.076 ↗
52. Early diagnosis of Alzheimer’s disease based on partial least squares, principal component analysis and support vector machine using segmented MRI images10.1016/j.neucom.2014.09.072 ↗
53. Ding, Y., Zhang, C., Lan, T., Qin, Z., Zhang, X., and Wang, W. (2015, January 9–12). Classification of Alzheimer’s disease based on the combination of morphometric feature and texture feature, in Bioinformatics and Biomedicine (BIBM). Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Washington, DC, USA.