journal article·2021-11-24Open access

Gastrointestinal Disease Classification in Endoscopic Images Using Attention-Guided Convolutional Neural Networks

Zenebe Markos Lonseko, Prince Ebenezer Adjei, Wenju Du, Chengsi Luo, Dingcan Hu, Linlin Zhu, Tao Gan, Nini Rao

Applied Sciences· Volume 11· Issue 23

Abstract

Gastrointestinal (GI) diseases constitute a leading problem in the human digestive system. Consequently, several studies have explored automatic classification of GI diseases as a means of minimizing the burden on clinicians and improving patient outcomes, for both diagnostic and treatment purposes. The challenge in using deep learning-based (DL) approaches, specifically a convolutional neural network (CNN), is that spatial information is not fully utilized due to the inherent mechanism of CNNs. This paper proposes the application of spatial factors in improving classification performance. Specifically, we propose a deep CNN-based spatial attention mechanism for the classification of GI diseases, implemented with encoder–decoder layers. To overcome the data imbalance problem, we adapt data-augmentation techniques. A total of 12,147 multi-sited, multi-diseased GI images, drawn from publicly available and private sources, were used to validate the proposed approach. Furthermore, a five-fold cross-validation approach was adopted to minimize inconsistencies in intra- and inter-class variability and to ensure that results were robustly assessed. Our results, compared with other state-of-the-art models in terms of mean accuracy (ResNet50 = 90.28, GoogLeNet = 91.38, DenseNets = 91.60, and baseline = 92.84), demonstrated better outcomes (Precision = 92.8, Recall = 92.7, F1-score = 92.8, and Accuracy = 93.19). We also implemented t-distributed stochastic neighbor embedding (t–SNE) and confusion matrix analysis techniques for better visualization and performance validation. Overall, the results showed that the attention mechanism improved the automatic classification of multi-sited GI disease images. We validated clinical tests based on the proposed method by overcoming previous limitations, with the goal of improving automatic classification accuracy in future work.
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Research context

OpenAlex topics: Colorectal Cancer Screening and Detection · COVID-19 diagnosis using AI · Gastrointestinal Bleeding Diagnosis and Treatment

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Center for Informational Biology, University of Electronic Science and Technology of China, Chengdu 610054, China

School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China

Department of Computer Engineering, Kwame Nkrumah University of Science and Technology, Kumasi AK-039-5028, Ghana

Digestive Endoscopic Center of West China Hospital, Sichuan University, Chengdu 610017, China

Funding

National Natural Science Foundation of China · the Key R&D Program of Sichuan Province

References (33)

Show source-provided references
1. Global Cancer Statistics 2020: GLOBOCAN Estimates of Incidence and Mortality Worldwide for 36 Cancers in 185 Countries10.3322/caac.21660 ↗
2. Pogorelov, K., Randel, K.R., Griwodz, C., Eskeland, S.L., De Lange, T., Johansen, D., Spampinato, C., Dang-Nguyen, D.T., Lux, M., and Schmidt, P.T. (2017, January 20–23). Kvasir: A Multi-Class Image Dataset for Computer Aided Gastrointestinal Disease Detection. Proceedings of the 8th ACM Multimedia Systems Conference, MMSys 2017, Taipei, Taiwan.10.1145/3083187.3083212 ↗
3. Magnifying Endoscopy Simple Diagnostic Algorithm for Early Gastric Cancer (MESDA-G)10.1111/den.12638 ↗
4. Ali, S., Zhou, F., Daul, C., Braden, B., Bailey, A., Realdon, S., East, J., Wagnières, G., Loschenov, V., and Grisan, E. (2019). Endoscopy Artifact Detection (EAD 2019) Challenge Dataset. arXiv.
5. Fine-Tuning Pre-Trained Convolutional Neural Networks for Gastric Precancerous Disease Classification on Magnification Narrow-Band Imaging Images10.1016/j.neucom.2018.10.100 ↗
6. Magalhaes, C., Mendes, J., and Vardasca, R. (2021). Meta-Analysis and Systematic Review of the Application of Machine Learning Classifiers in Biomedical Applications of Infrared Thermography. Appl. Sci., 11.10.3390/app11020842 ↗
7. Fault Diagnosis of Electric Impact Drills Using Thermal Imaging10.1016/j.measurement.2020.108815 ↗
8. Automatic Anatomical Classification of Esophagogastroduodenoscopy Images Using Deep Convolutional Neural Networks10.1038/s41598-018-25842-6 ↗
9. Attention Augmented Residual Network for Tomato Disease Detection and Classification10.3906/elk-2105-115 ↗
10. Deep Feature Learning for Automatic Tissue Classification of Coronary Artery Using Optical Coherence Tomography10.1364/BOE.8.001203 ↗
11. Lonseko, Z.M., Adjei, P.E., Du, W., Luo, C., Wang, Y., Hu, D., Gan, T., and Rao, N. (2021, January 28–30). Semi-Supervised Gastrointestinal Lesion Segmentation Using Adversarial Learning. Proceedings of the 2021 IEEE 3rd Eurasia Conference on Biomedical Engineering, Healthcare and Sustainability (ECBIOS), Tainan, Taiwan.10.1109/ECBIOS51820.2021.9510611 ↗
12. Identification of Lesion Images from Gastrointestinal Endoscope Based on Feature Extraction of Combinational Methods with and without Learning Process10.1016/j.media.2016.04.007 ↗
13. Hu, J., Shen, L., and Sun, G. (2018, January 18–23). Squeeze-and-Excitation Networks. Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition, Salt Lake City, UT, USA.10.1109/CVPR.2018.00745 ↗
14. Research on Crop Disease Classification Algorithm Based on Mixed Attention Mechanism
15. Automatic Classification of Esophageal Disease in Gastroscopic Images Using an Efficient Channel Attention Deep Dense Convolutional Neural Network10.1364/BOE.420935 ↗
16. Detecting Early Gastric Cancer: Comparison between the Diagnostic Ability of Convolutional Neural Networks and Endoscopists10.1111/den.13688 ↗
17. Application of Convolutional Neural Network in the Diagnosis of the Invasion Depth of Gastric Cancer Based on Conventional Endoscopy10.1016/j.gie.2018.11.011 ↗
18. Wang, F., Jiang, M., Qian, C., Yang, S., Li, C., Zhang, H., Wang, X., and Tang, X. (2017, January 21–26). Residual Attention Network for Image Classification. Proceedings of the 30th IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2017, Honolulu, HI, USA.10.1109/CVPR.2017.683 ↗
19. Thorax Disease Classification with Attention Guided Convolutional Neural Network10.1016/j.patrec.2019.11.040 ↗
20. Skin Lesion Classification Using Cnns with Patch-Based Attention and Diagnosis-Guided Loss Weighting10.1109/TBME.2019.2915839 ↗
21. Lesion Location Attention Guided Network for Multi-Label Thoracic Disease Classification in Chest X-Rays10.1109/JBHI.2019.2952597 ↗
22. Tao, S., Jiang, Y., Cao, S., Wu, C., and Ma, Z. (2021). Attention-Guided Network with Densely Connected Convolution for Skin Lesion Segmentation. Sensors, 21.10.3390/s21103462 ↗
23. Wang, Q., Wu, B., Zhu, P., Li, P., Zuo, W., and Hu, Q. (2020, January 13–19). ECA-Net: Efficient Channel Attention for Deep Convolutional Neural Networks. Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, Seattle, WA, USA.10.1109/CVPR42600.2020.01155 ↗
24. GIE Editorial Board Top 10 Topics: Advances in GI Endoscopy in 201910.1016/j.gie.2020.05.021 ↗
25. Artificial Intelligence and Upper Gastrointestinal Endoscopy: Current Status and Future Perspective10.1111/den.13317 ↗
26. Diagnostic Outcomes of Esophageal Cancer by Artificial Intelligence Using Convolutional Neural Networks10.1016/j.gie.2018.07.037 ↗
27. Hajderanj, L., Weheliye, I., and Chen, D. (2019). A New Supervised T-SNE with Dissimilarity Measure for Effective Data Visualization and Classification. ACM International Conference Proceeding Series, ACM.10.1145/3328833.3328853 ↗
28. Machine Learning Applications in Microbial Ecology, Human Microbiome Studies, and Environmental Monitoring10.1016/j.csbj.2021.01.028 ↗
29. Gastrointestinal Tract Classification Using Improved LSTM Based CNN10.1007/s11042-020-09468-3 ↗
30. He, K., Zhang, X., Ren, S., and Sun, J. (July, January 26). Deep Residual Learning for Image Recognition. Proceedings of the IEEE Computer Society Conference on Computer Vision and Pattern Recognition, Las Vegas, NV, USA.
31. Ioffe, S., and Szegedy, C. (2015, January 6–11). Batch Normalization: Accelerating Deep Network Training by Reducing Internal Covariate Shift. Proceedings of the 32nd International Conference on Machine Learning, ICML 2015, Lille, France.
32. Huang, G., Liu, Z., Van Der Maaten, L., and Weinberger, K.Q. (2017, January 21–26). Densely Connected Convolutional Networks. Proceedings of the 30th IEEE Conference on Computer Vision and Pattern Recognition, CVPR 2017, Honolulu, HI, USA.10.1109/CVPR.2017.243 ↗
33. Owais, M., Arsalan, M., Choi, J., Mahmood, T., and Park, K.R. (2019). Artificial Intelligence-Based Classification of Multiple Gastrointestinal Diseases Using Endoscopy Videos for Clinical Diagnosis. J. Clin. Med., 8.10.3390/jcm8070986 ↗