Peak Fitting Applied to Fourier Transform Infrared and Raman Spectroscopic Analysis of Proteins
Source abstract
Abstract
FTIR and Raman spectroscopy are often used to investigate the secondary structure of proteins. Focus is then often laid on the different features that can be distinguished in the Amide I band (1600–1700 cm−1) and, to a lesser extent, the Amide II band (1510–1580 cm−1), signature regions for C=O stretching/N-H bending, and N-H bending/C-N stretching vibrations, respectively. Proper investigation of all hidden and overlapping features/peaks is a necessary step to achieve reliable analysis of FTIR and FT-Raman spectra of proteins. This paper discusses a method to identify, separate, and quantify the hidden peaks in the amide I band region of infrared and Raman spectra of four globular proteins in aqueous solution as well as hydrated zein and gluten proteins. The globular proteins studied, which differ widely in terms of their secondary structures, include immunoglobulin G, concanavalin A, lysozyme, and trypsin. Peak finding was done by analysis of the second derivative of the original spectra. Peak separation and quantification was achieved by curve fitting using the Voigt function. Structural data derived from the FT-Raman and FTIR analyses were compared to literature reports on protein structure. This manuscript proposes an accurate method to analyze protein secondary structure based on the amide I band in vibrational spectra.
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Research context
OpenAlex topics: Proteins in Food Systems · Enzyme Production and Characterization · Protein Interaction Studies and Fluorescence Analysis
SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.
Affiliations
Department of Food Science, University of Guelph, Guelph, ON N1G 2W1, Canada
Funding
NSERC · Ontario Trillium Scholarship
References (65)
Show source-provided references
1. [22] Infrared spectroscopy—Conformation10.1016/S0076-6879(72)26024-4 ↗
2. [13] Resolution-enhanced fourier transform infrared spectroscopy of enzymes
3. Evidence of chain folding in polypeptides and proteins10.1039/df9500900246 ↗
4. New insight into protein secondary structure from resolution-enhanced infrared spectra10.1016/0167-4838(88)90107-0 ↗
5. Protein secondary structures in water from second-derivative amide I infrared spectra10.1021/bi00465a022 ↗
6. Fourier transform infrared spectroscopic analysis of protein secondary structures10.1111/j.1745-7270.2007.00320.x ↗
7. Circular dichroic analysis of protein conformation: Inclusion of the β-turns10.1016/0003-2697(78)90812-6 ↗
8. Estimation of globular protein secondary structure from circular dichroism10.1021/bi00504a006 ↗
9. Information content in the circular dichroism of proteins10.1021/bi00508a007 ↗
10. Molecular spectroscopy to assess protein structures within cereal systems10.1016/j.cofs.2019.02.001 ↗
11. Changes in Protein Secondary Structure during Gluten Deformation Studied by Dynamic Fourier Transform Infrared Spectroscopy10.1021/bm049584d ↗
12. Polymer Conformation Structure of Wheat Proteins and Gluten Subfractions Revealed by ATR-FTIR10.1094/CC-83-0407 ↗
13. Changes in Secondary Protein Structures During Mixing Development of High Absorption (90%) Flour and Water Mixtures10.1094/CC-83-0136 ↗
14. Structural Modifications of Gluten Proteins in Strong and Weak Wheat Dough During Mixing10.1094/CCHEM-10-13-0212-R ↗
15. Effect of Transglutaminase, Citrate Buffer, and Temperature on a Soft Wheat Flour Dough System10.1094/CCHEM-09-13-0176-R ↗
16. Effects of Temperature and Water Content on the Secondary Structure of Wheat Gluten Studied by FTIR Spectroscopy10.1021/bm050667j ↗
17. FTIR and NMR studies on the hydration of a high-Mr subunit of glutenin10.1016/0141-8130(95)93520-8 ↗
18. Bran-induced changes in water structure and gluten conformation in model gluten dough studied by Fourier transform infrared spectroscopy10.1016/j.foodhyd.2012.10.014 ↗
19. Vibrational Spectroscopy and Conformation of Peptides, Polypeptides, and Proteins
20. Quantitative IR Spectrophotometry of Peptide Compounds in Water (H2O) Solutions. II. Amide Absorption Bands of Polypeptides and Fibrous Proteins in A-, B-, and Random Coil Conformations
21. Quantitative IR spectrophotometry of peptide compounds in water (H2O) solutions. I. Spectral parameters of amino acid residue absorption bands
22. Quantitative IR Spectrophotometry of Peptide Compounds in Water (H2O) Solutions. III. Estimation of the Protein Secondary Structure
23. Examination of the secondary structure of proteins by deconvolved FTIR spectra
24. Protein structure by Fourier transform infrared spectroscopy: Second derivative spectra10.1016/0006-291X(83)91016-1 ↗
25. Effect of Heavy Water on Protein Flexibility10.1016/S0006-3495(02)75666-X ↗
26. Stability of globular proteins in H2O and D2O
27. Smith, B.C. (2011). Fundamentals of Fourier Transform Infrared Spectroscopy, CRC Press.10.1201/b10777 ↗
28. FT-Raman Spectroscopy and Its Applications in Cereal Science10.1094/CCHEM.2002.79.2.171 ↗
29. Vibrational microspectroscopy of food. Raman vs. FT-IR10.1016/S0924-2244(02)00243-1 ↗
30. Maximum Entropy Deconvolution of Infrared Spectra: Use of a Novel Entropy Expression without Sign Restriction10.1366/0003702053641504 ↗
31. Peak separation by derivative spectroscopy applied to ftir analysis of hydrolized silica10.1590/S0103-50532008000800019 ↗
32. Ligand-Induced Conformational and Structural Dynamics Changes inEscherichia coliCyclic AMP Receptor Protein†10.1021/bi020036z ↗
33. Fourier Self-Deconvolution: A Method for Resolving Intrinsically Overlapped Bands10.1366/0003702814732634 ↗
34. Chemometrics: Data Analysis for the Laboratory and Chemical Plant, Chichester: Wiley, 2003, 489 pp10.1007/s10809-005-0223-6 ↗
35. Review of multidimensional data processing approaches for Raman and infrared spectroscopy10.1140/epjti/s40485-015-0018-6 ↗
36. General Expression for the Voigt Function That is of Special Interest for Applied Spectroscopy10.1366/0003702011952839 ↗
37. The solution structure of concanavalin A probed by FT-IR spectroscopy10.1016/0167-4838(88)90125-2 ↗
38. Shewry, P.R., and Lookhart, G.L. (2003). Wheat Gluten Protein Analysis, American Association of Cereal Chemists.
39. Comparison of Changes in the Secondary Structure of Unheated, Heated, and High-Pressure-Treated β-Lactoglobulin and Ovalbumin Proteins Using Fourier Transform Raman Spectroscopy and Self-Deconvolution10.1021/jf030649y ↗
40. Structural patterns in globular proteins10.1038/261552a0 ↗
41. The Anatomy and Taxonomy of Protein Structure10.1016/S0065-3233(08)60520-3 ↗
42. Automatic identification of secondary structure in globular proteins10.1016/0022-2836(77)90207-8 ↗
43. Fourier transform IR spectroscopic study of hydration-induced structure changes in the solid state of ω-gliadins10.1042/bj3190741 ↗
44. Conformation of wheat gluten proteins Comparison between functional and solution states as determined by infrared spectroscopy10.1016/0014-5793(92)80125-Z ↗
45. Evaluation of the Protein Secondary Structures Using Fourier Transform Infrared Spectroscopy
46. Fourier Deconvolution of the Amide I Raman Band of Proteins as Related to Conformation10.1366/0003702884428905 ↗
47. Determination of the secondary structure of proteins by laser Raman spectroscopy10.1021/ja00438a057 ↗
48. The Covalent and Three-Dimensional Structure of Concanavalin A10.1073/pnas.69.9.2580 ↗
49. Decoding vibrational states of Concanavalin A amyloid fibrils10.1016/j.bpc.2015.02.007 ↗
50. Laser Raman spectroscopy and the conformation of insulin and proinsulin10.1016/0022-2836(72)90167-2 ↗
51. Belitz, I.H.-D., and Grosch, I.W. (2013). Food Chemistry, Springer Science & Business Media.
52. Delcour, J.A., and Hoseney, R.C. (2010). Principles of Cereal Science and Technology. Principles of Cereal Science and Technology, AACC International Inc.10.1094/9781891127632 ↗
53. Wheat Gluten Functionality as a Quality Determinant in Cereal-Based Food Products10.1146/annurev-food-022811-101303 ↗
54. The Beta-Turn Conformation in Wheat Gluten Proteins: Relationship to Gluten Elasticity
55. Mini Review: On the Elasticity of Wheat Gluten10.1006/jcrs.1998.0227 ↗
56. Konjac glucomannan-induced changes in thiol/disulphide exchange and gluten conformation upon dough mixing10.1016/j.foodchem.2013.07.088 ↗
57. Similarities and differences in secondary structure of viscoelastic polymers of maize α-zein and wheat gluten proteins10.1016/j.jcs.2006.09.009 ↗
58. Raman studies of gluten proteins aggregation induced by dietary fibres10.1016/j.foodchem.2015.07.132 ↗
59. Factors Associated with Dough Stickiness as Sensed by Attenuated Total Reflectance Infrared Spectroscopy10.1094/CCHEM.2003.80.4.378 ↗
60. Viscoelasticity of Zein-Starch Doughs
61. A structural model for maize zein proteins10.1016/S0021-9258(18)33974-7 ↗
62. Structural Characterization of α-Zein10.1021/jf058135h ↗
63. The prolamin storage proteins of cereal seeds: Structure and evolution10.1042/bj2670001 ↗
64. Conformational Changes and Molecular Mobility in Plasticized Proteins10.1021/bm800759g ↗
65. Effects of different concentrations of ethanol and isopropanol on physicochemical properties of zein-based films10.1016/j.indcrop.2013.12.034 ↗