journal article·2019-12

DFT and 2D-CA methods unravelling the mechanism of interfacial interaction between amino acids and Ca-montmorillonite

Hai-long Li, Liang Bian, Fa-qin Dong, Wei-min Li, Mian-xin Song, Jia-nan Nie, Xiao-nan Liu, Ting-ting Huo, Hong-ping Zhang, Bing Xu, Frank S. Riehle, Shu-hui Sun

Publisher page

Abstract

Abstract We explored the effect of contact time on the interfacial interaction mechanism of amino acids (AAs) connected to the aluminol group (AlOH) and interlayer Ca ions of Ca-montmorillonite (Ca Mt) in an aqueous solution using density functional theory (DFT) and two-dimensional correlation analysis (2D-CA) technology. The results showed that these interactions include electrostatic (or van-der-Waals) interaction, cation exchange and hydrophilic interaction. In particular, the electrostatic (or van-der-Waals) interaction between the –COO−(H) (and –NH3+) groups of the AAs and surface negative O atoms of Ca Mt were found to be the main interaction leading to the adsorption behaviour of AAs onto Ca Mt. With increasing contact time, the Ca-d0 orbital splitting (dx2+y2 → dx2+y2 + dZ2) not only changes the orbital coupling between the Ca-d0 and O-2p4 orbitals (Ca-dx2+y2-O-2p4 → Ca-dx2+y2 + dZ2-O-2p4) but also enhances the formation of Ca+–COO−(H) p-p σ (neutral: glycine and serine) and Ca+-NH3+ p-p π (charged: glutamate and arginine) hybrid orbitals, as well as the cation exchange (AlOH-Ca + AAs) that mainly contributes to the short-range van-der-Waals interaction. Furthermore, the H-1 s (H2O) orbital is degenerate, which in turn enhances the orbital overlap of H-1 s (H2O) with O-2p4 (-HOCO) and N-2p3 (-NH3), leading to the formation of hydrated clusters: -NH3·(H2O)+ and –HOCO·(H2O)−. The hydrophilic interaction (AlOH-H2O + AAs) mainly contributes to the long-range electrostatic interaction. The results of the study provide a new perspective to understand the adsorption process of AAs onto clay mineral surfaces.
Source: openaire · Quality: candidate unverified · Source record ↗

Research context

OpenAlex topics: Spectroscopy and Quantum Chemical Studies · Clay minerals and soil interactions · Iron oxide chemistry and applications

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

References (46)

Show source-provided references
1. Chemical evolution and origin of life: a review
2. Density Functional Theory (DFT) study of the Hydration steps of Na+/Mg2+/Ca2+/Sr2+/Ba2+-exchanged Montmorillonites10.1346/CCMN.2010.0580204 ↗
3. DFT and two-dimensional correlation analysis methods for evaluating the Pu3+-Pu4+ electronic transition of plutonium-doped zircon10.1016/j.jhazmat.2015.03.053 ↗
4. DFT and two-dimensional correlation analysis for evaluating the oxygen defect mechanism of low-density 4f (or 5f) elements interacting with Ca-Mt10.1039/C4RA14978E ↗
5. First principles simulation of temperature dependent electronic transition of FM-AFM phase BFO10.1007/s00894-015-2583-7 ↗
6. Effects of complexation between organic matter (OM) and clay mineral on OM pyrolysis10.1016/j.gca.2017.04.045 ↗
7. Formation of macromolecules with peptide bonds via the thermal evolution of amino acids in the presence of montmorillonite: insight into prebiotic geochemistry on the early Earth10.1016/j.chemgeo.2019.02.023 ↗
8. Reactions of lysine with montmorillonite at 80°c: implications for optical activity, h+ transfer and lysine- montmorillonite binding10.1016/j.jcis.2009.01.031 ↗
9. Adsorption and desorption of proteins and polyamino acids by clay minerals and marine sediments10.1016/S0304-4203(01)00085-8 ↗
10. Spectroscopic evidence and molecular simulation investigation of the bonding interaction between lysine and montmorillonite: Implications for the distribution of soil organic nitrogen10.1016/j.clay.2017.11.020 ↗
11. Salinity and pH affect Na+-montmorillonite dissolution and amino acid adsorption: a prebiotic chemistry study10.1017/S1473550414000044 ↗
12. Investigation of the initial stages of the montmorillonite acid-activation process using DFT calculations10.1016/j.clay.2018.08.012 ↗
13. Adsorption of Protein and Non-Protein Amino Acids on a Clay Mineral: a possible Role of selection in Chemical Evolution10.1007/BF01804978 ↗
14. Pentachlorophenol radical cations generated on Fe(III)-montmorillonite initiate octachlorodibenzo-p-dioxin formation in clays: density functional theory and fourier transform infrared studies10.1021/es103324z ↗
15. Amino Acid Adsorption by clay minerals in distilled water10.1016/0016-7037(87)90237-7 ↗
16. Hydrolytic activity of vanadate toward serine-containing peptides studied by kinetic experiments and DFT theory10.1021/ic300761g ↗
17. Selectivities in Adsorption and Peptidic Condensation in the (Arginine and Glutamic Acid)/ Montmorillonite clay system10.1021/jp507335e ↗
18. Significance of mineral salts in Prebiotic RNA Synthesis Catalyzed by Montmorillonite10.1007/s00239-013-9568-x ↗
19. Adsorption of glycine and alanine on montmorillonite with or without coordinated divalent cations
20. Mechanical properties of the sodium montmorillonite interlayer intercalated with amino acids10.1021/bm0503219 ↗
21. Glyphosate adsorption on montmorillonite: an experimental and theoretical study of surface complexes10.1016/j.clay.2010.07.018 ↗
22. In situ, ATR-IR investigation of l-lysine adsorption on montmorillonite10.1016/j.jcis.2009.06.061 ↗
23. Laby · 1962
24. Adsorption and polymerization of amino acids on mineral surfaces: a review10.1007/s11084-008-9128-3 ↗
25. Theoretical study of the adsorption of DNA bases on the acidic external surface of montmorillonite10.1039/C1CP22454A ↗
26. Theoretical study of the adsorption of RNA/DNA bases on the external surfaces of Na+-Montmorillonite10.1021/jp901699q ↗
27. Molecular dynamics simulation of Cationic and Anionic Clays containing Amino Acids10.1021/la0114528 ↗
28. Effects of physical and chemical properties of soils on adsorption of the insecticidal protein (Cry1Ab) from Bacillus thuringiensis at Cry1Ab protein concentrations relevant for experimental field sites10.1016/j.soilbio.2007.06.015 ↗
29. Influence of Ca2+, on tetracycline adsorption on montmorillonite10.1016/j.jcis.2011.10.079 ↗
30. Adsorption and Oxidative transformation of Phenolic Acids by Fe(III)-Montmorillonite10.1021/es1007593 ↗
31. Adsorption of glycine on montmorillonite in aqueous solutions10.1016/j.clay.2013.05.007 ↗
32. A DFT study of the adsorption of glycine in the interlayer space of montmorillonite10.1039/C7CP02300F ↗
33. Kinetic study for adsorption humic acid on soil minerals10.1021/jp3078826 ↗
34. Effect of I nterlayer counterions on the structures of dry montmorillonites with Si4+/Al3+ substitution10.1016/j.commatsci.2012.11.019 ↗
35. Free energies of absorption of alkali ions onto beidellite and montmorillonite surfaces from constrained molecular dynamics simulations10.1016/j.gca.2012.04.060 ↗
36. Influence of surface chemistry and charge on Mineral–RNA interactions10.1021/la303352g ↗
37. A study the interaction forces between the bovine serum albumin protein and montmorillonite surface10.1016/j.colsurfa.2012.08.066 ↗
38. Adsorption and desorption of aliphatic amines, amino acids and acetate by clay minerals and marine sediments10.1016/0304-4203(93)90002-6 ↗
39. Molecular dynamics simulations of the adsorption of proteins on clay mineral surfaces10.1016/S0022-2860(00)00655-4 ↗
40. Adsorption of proteins and nucleic acids on clay minerals and their interactions: a review10.1016/j.clay.2013.06.003 ↗
41. Role of the interlayer space of montmorillonite in hydrocarbon generation: an experimental study based on high temperature- pressure pyrolysis10.1016/j.clay.2013.03.007 ↗
42. A review of adsorption of amino acids on minerals: was it important for origin of life10.1007/s00726-004-0106-4 ↗
43. Which amino acids should be used in prebiotic chemistry studies?10.1007/s11084-008-9150-5 ↗
44. Monte Carlo and molecular dynamic simulations of CH4 diffusion in kaolinite as functions of pressure and temperature10.1016/j.jngse.2018.03.024 ↗
45. Effect of water on methane adsorption on the kaolinite (001) surface based on molecular simulations
46. Microstructure of single chain quaternary ammonium cations intercalated into montmorillonite: a molecular dynamics study10.1021/la303422p ↗