journal article·2024-03

Machine‐Learning‐Assisted Nanozyme Design: Lessons from Materials and Engineered Enzymes

Jie Zhuang, Adam C. Midgley, Yonghua Wei, Qiqi Liu, Deling Kong, Xinglu Huang

Advanced Materials· Volume 36· Issue 10
Publisher page

Abstract

Abstract Nanozymes are nanomaterials that exhibit enzyme‐like biomimicry. In combination with intrinsic characteristics of nanomaterials, nanozymes have broad applicability in materials science, chemical engineering, bioengineering, biochemistry, and disease theranostics. Recently, the heterogeneity of published results has highlighted the complexity and diversity of nanozymes in terms of consistency of catalytic capacity. Machine learning (ML) shows promising potential for discovering new materials, yet it remains challenging for the design of new nanozymes based on ML approaches. Alternatively, ML is employed to promote optimization of intelligent design and application of catalytic materials and engineered enzymes. Incorporation of the successful ML algorithms used in the intelligent design of catalytic materials and engineered enzymes can concomitantly facilitate the guided development of next‐generation nanozymes with desirable properties. Here, recent progress in ML, its utilization in the design of catalytic materials and enzymes, and how emergent ML applications serve as promising strategies to circumvent challenges associated with time‐expensive and laborious testing in nanozyme research and development are summarized. The potential applications of successful examples of ML‐aided catalytic materials and engineered enzymes in nanozyme design are also highlighted, with special focus on the unified aims in enhancing design and recapitulation of substrate selectivity and catalytic activity.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Advanced Nanomaterials in Catalysis · Nanocluster Synthesis and Applications · Nanoparticles: synthesis and applications

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

School of Medicine, and State Key Laboratory of Medicinal Chemical Biology Nankai University Tianjin 300071 China

Key Laboratory of Bioactive Materials for the Ministry of Education College of Life Sciences State Key Laboratory of Medicinal Chemical Biology, and Frontiers Science Center for Cell Responses Nankai University Tianjin 300071 China

Funding

National Natural Science Foundation of China

References (100+)

Show source-provided references
1. 10.1039/c3cs35486e10.1039/c3cs35486e ↗
2. 10.1039/C8CS00457A10.1039/C8CS00457A ↗
3. 10.1021/acs.chemrev.8b0067210.1021/acs.chemrev.8b00672 ↗
4. 10.1016/j.bios.2020.11288210.1016/j.bios.2020.112882 ↗
5. 10.3390/bios1105015210.3390/bios11050152 ↗
6. 10.1039/D0TB02051F10.1039/D0TB02051F ↗
7. 10.1007/s00604-020-04390-910.1007/s00604-020-04390-9 ↗
8. 10.1016/j.bios.2022.11476810.1016/j.bios.2022.114768 ↗
9. 10.3390/antibiotics1103039010.3390/antibiotics11030390 ↗
10. 10.1002/wnan.176910.1002/wnan.1769 ↗
11. 10.1016/j.biomaterials.2021.12095110.1016/j.biomaterials.2021.120951 ↗
12. 10.1021/acsnano.0c0797310.1021/acsnano.0c07973 ↗
13. 10.7150/thno.5191210.7150/thno.51912 ↗
14. 10.1021/acs.nanolett.9b0133310.1021/acs.nanolett.9b01333 ↗
15. 10.1039/D0SC04984K10.1039/D0SC04984K ↗
16. 10.1021/acs.accounts.1c0005510.1021/acs.accounts.1c00055 ↗
17. 10.1021/jacs.0c0839510.1021/jacs.0c08395 ↗
18. 10.1016/j.biomaterials.2020.12016010.1016/j.biomaterials.2020.120160 ↗
19. 10.1021/acsami.2c0930410.1021/acsami.2c09304 ↗
20. 10.1016/j.bioactmat.2022.05.02510.1016/j.bioactmat.2022.05.025 ↗
21. 10.1002/anie.20211310310.1002/anie.202113103 ↗
22. 10.1021/acsami.1c0551210.1021/acsami.1c05512 ↗
23. 10.1002/adma.20211035210.1002/adma.202110352 ↗
24. 10.1002/smll.20220214510.1002/smll.202202145 ↗
25. 10.1039/C9RA09021E10.1039/C9RA09021E ↗
26. 10.3389/fonc.2021.66601710.3389/fonc.2021.666017 ↗
27. 10.1021/acsami.1c1261110.1021/acsami.1c12611 ↗
28. 10.1016/j.biomaterials.2019.11963510.1016/j.biomaterials.2019.119635 ↗
29. 10.1002/adma.20210312810.1002/adma.202103128 ↗
30. 10.1002/adma.20200657010.1002/adma.202006570 ↗
31. 10.1038/nnano.2007.26010.1038/nnano.2007.260 ↗
32. 10.1016/j.nantod.2021.10126910.1016/j.nantod.2021.101269 ↗
33. 10.1021/acscatal.1c0121910.1021/acscatal.1c01219 ↗
34. 10.1002/adma.20210411310.1002/adma.202104113 ↗
35. 10.1016/j.actbio.2021.05.05310.1016/j.actbio.2021.05.053 ↗
36. 10.1021/acscatal.0c0347210.1021/acscatal.0c03472 ↗
37. 10.1021/acscatal.9b0418610.1021/acscatal.9b04186 ↗
38. 10.1021/acsomega.9b0367310.1021/acsomega.9b03673 ↗
39. 10.1016/bs.mie.2020.05.00510.1016/bs.mie.2020.05.005 ↗
40. Feehan R. · Protein Eng., Des. Sel. · 2021 · 34
41. 10.1021/acscatal.9b0432110.1021/acscatal.9b04321 ↗
42. 10.1021/acs.jpcb.2c0328710.1021/acs.jpcb.2c03287 ↗
43. 10.1016/S0167-7799(00)01522-510.1016/S0167-7799(00)01522-5 ↗
44. 10.1016/j.copbio.2010.08.01110.1016/j.copbio.2010.08.011 ↗
45. 10.1002/smll.20210442010.1002/smll.202104420 ↗
46. 10.1021/acsnano.2c0769110.1021/acsnano.2c07691 ↗
47. 10.1038/s41467-022-33098-y10.1038/s41467-022-33098-y ↗
48. 10.1016/j.bioactmat.2021.10.02310.1016/j.bioactmat.2021.10.023 ↗
49. 10.1016/j.biomaterials.2021.12127210.1016/j.biomaterials.2021.121272 ↗
50. 10.1002/smll.20200428010.1002/smll.202004280 ↗
51. 10.1039/C9TB02542A10.1039/C9TB02542A ↗
52. 10.1002/smll.20190310810.1002/smll.201903108 ↗
53. 10.1039/D0AN01846E10.1039/D0AN01846E ↗
54. 10.7150/thno.6632510.7150/thno.66325 ↗
55. 10.1021/acsnano.2c0296610.1021/acsnano.2c02966 ↗
56. 10.1038/s41580-021-00407-010.1038/s41580-021-00407-0 ↗
57. 10.1002/cpt.179610.1002/cpt.1796 ↗
58. 10.1007/978-1-62703-748-8_710.1007/978-1-62703-748-8_7 ↗
59. Luo Q. · Comput. Intell. Neurosci. · 2022 · 2022
60. 10.1080/17460441.2019.154903310.1080/17460441.2019.1549033 ↗
61. 10.2174/157340991466618110911003010.2174/1573409914666181109110030 ↗
62. 10.1007/s12539-021-00483-y10.1007/s12539-021-00483-y ↗
63. Huang C. · Evidence‐Based Complementary Altern. Med. · 2022 · 2022
64. 10.1080/07315724.2020.186962410.1080/07315724.2020.1869624 ↗
65. 10.1093/nar/gkaa37210.1093/nar/gkaa372 ↗
66. 10.1093/nar/gkx101210.1093/nar/gkx1012 ↗
67. 10.1126/sciadv.aay427510.1126/sciadv.aay4275 ↗
68. 10.1039/C9NR02873K10.1039/C9NR02873K ↗
69. 10.1021/acsnano.9b0422010.1021/acsnano.9b04220 ↗
70. 10.1021/acs.jpclett.1c0352610.1021/acs.jpclett.1c03526 ↗
71. 10.1038/s41578-020-00255-y10.1038/s41578-020-00255-y ↗
72. 10.1038/s41578-021-00337-510.1038/s41578-021-00337-5 ↗
73. 10.1021/acsomega.1c0633710.1021/acsomega.1c06337 ↗
74. 10.1021/acs.jpclett.7b0201010.1021/acs.jpclett.7b02010 ↗
75. 10.1039/D1CP05513E10.1039/D1CP05513E ↗
76. 10.1007/s12010-008-8465-z10.1007/s12010-008-8465-z ↗
77. 10.1002/cctc.20120066510.1002/cctc.201200665 ↗
78. 10.1016/j.ijhydene.2016.10.00310.1016/j.ijhydene.2016.10.003 ↗
79. 10.1002/cctc.20190097110.1002/cctc.201900971 ↗
80. 10.1021/acs.jpcc.7b0868610.1021/acs.jpcc.7b08686 ↗
81. 10.1038/s41929-018-0142-110.1038/s41929-018-0142-1 ↗
82. 10.1021/jacs.5b1208710.1021/jacs.5b12087 ↗
83. 10.1021/acsnano.1c0752010.1021/acsnano.1c07520 ↗
84. 10.1039/D0SC03522J10.1039/D0SC03522J ↗
85. 10.1002/anie.20221404210.1002/anie.202214042 ↗
86. 10.1073/pnas.190197911610.1073/pnas.1901979116 ↗
87. 10.1093/bioinformatics/btx68010.1093/bioinformatics/btx680 ↗
88. 10.3389/fgene.2018.0071410.3389/fgene.2018.00714 ↗
89. 10.1186/s12859-018-2368-y10.1186/s12859-018-2368-y ↗
90. 10.1073/pnas.182190511610.1073/pnas.1821905116 ↗
91. 10.7717/peerj.475010.7717/peerj.4750 ↗
92. 10.1016/j.jtbi.2018.01.02310.1016/j.jtbi.2018.01.023 ↗
93. 10.1093/bioinformatics/bty81310.1093/bioinformatics/bty813 ↗
94. 10.1038/s41467-021-24070-310.1038/s41467-021-24070-3 ↗
95. 10.1039/D0SC03261A10.1039/D0SC03261A ↗
96. 10.1038/s41467-018-07717-610.1038/s41467-018-07717-6 ↗
97. 10.7554/eLife.5453210.7554/eLife.54532 ↗
98. 10.1038/s41598-018-35033-y10.1038/s41598-018-35033-y ↗
99. 10.1002/bit.2760810.1002/bit.27608 ↗
100. 10.1093/nar/gky104810.1093/nar/gky1048 ↗