Enzyme-assisted isothermal amplification of nucleic acids on the electrode surface
Source abstract
Abstract
The detection of genetic material (DNA or RNA) is becoming increasingly important not only in the clinical practice but also in food quality control or environmental analysis. Since the amount of the specific nucleic acid sequences targeted is often very low, nucleic acid tests usually involve an amplification step, which makes many copies of the target. Although the polymerase chain reaction (PCR) is the gold standard, nature provides amplification systems that proceed at a constant temperature and are easier to adapt to electrochemical platforms for point-of-need applications. In this short review, we chronicle the evolution of enzyme-assisted isothermal nucleic acid amplification strategies, specifically helicase-dependent amplification (HDA), loop-mediated isothermal amplification (LAMP), and recombinase polymerase amplification (RPA), directly coupled to conductive platforms to facilitate the electrochemical transduction, describing the current state of the art, and identifying some of the challenges to bring these new platforms to the real practice as point-of-need tests.
Source: openalex_inverted_index · Quality: baseline
Research context
OpenAlex topics: Advanced biosensing and bioanalysis techniques · Biosensors and Analytical Detection · CRISPR and Genetic Engineering
SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.
References (53)
Show source-provided references
1. Nucleic acid tests for clinical translation10.1021/acs.chemrev.1c00241 ↗
2. Commercially available rapid diagnostic tests for the detection of high priority pathogens: status and challenges10.1039/D0AN02286A ↗
3. Domingues · 2017
4. Solid phase DNA amplification: characterisation of primer attachment and amplification mechanisms10.1093/nar/28.20.e87 ↗
5. Hybridization at a surface: the role of spacers in DNA microarrays10.1021/la0616606 ↗
6. Hybridization and self-assembly behaviors of surface-immobilized DNA in close proximity: a single-molecule perspective10.1002/agt2.186 ↗
7. Enhanced solid phase PCR: mechanisms to increase priming by solid support primers10.1016/j.ab.2008.01.021 ↗
8. Universal protocol for grafting PCR primers onto various lab-on-a-chip substrates for solid-phase PCR10.1039/c2ra01250b ↗
9. Electrochemical real-time polymerase chain reaction10.1021/ja065733j ↗
10. Isothermal amplifications - a comprehensive review on current methods10.1080/10409238.2021.1937927 ↗
11. Helicase-dependent isothermal amplification: a novel tool in the development of molecular-based analytical systems for rapid pathogen detection10.1007/s00216-017-0620-3 ↗
12. Real-time electrochemical monitoring of isothermal helicase-dependent amplification of nucleic acids10.1039/c1an15289k ↗
13. Attomolar quantitation of Mycobacterium tuberculosis by asymmetric helicase-dependent isothermal DNA-amplification and electrochemical detection10.1016/j.bios.2014.12.029 ↗
14. Comparison of isothermal helicase-dependent amplification and PCR for the detection of Mycobacterium tuberculosis by an electrochemical genomagnetic assay10.1007/s00216-016-9514-z ↗
15. Sequence-specific electrochemical detection of enzymatic amplification products of Salmonella genome on ITO electrodes improves pathogen detection to the single copy level10.1016/j.snb.2018.04.133 ↗
16. Helicase-dependent onchip-amplification and its use in multiplex pathogenic detection10.1016/j.cca.2009.03.021 ↗
17. Solid-phase helicase dependent amplification and electrochemical detection of Salmonella on highly stable oligonucleotide-modified ITO electrodes10.1039/C7CC05128J ↗
18. Principles and applications of loop-mediated isothermal amplification to point-of-care tests10.3390/bios12100857 ↗
19. Real-time electrochemical LAMP: a rational comparative study of different DNA intercalating and non-intercalating redox probes10.1039/C6AN00867D ↗
20. Electrochemical LAMP-based assay for detection of RNA biomarkers in prostate cancer10.1016/j.talanta.2021.123064 ↗
21. Lateral flow–based nucleic acid detection of SARS-CoV-2 using enzymatic incorporation of biotin-labeled dUTP for POCT use10.1007/s00216-022-03880-4 ↗
22. Electrochemical DNA biosensor coupled to LAMP reaction for early diagnostics of cervical precancerous lesions
23. Real-time gene analysis based on a portable electrochemical microfluidic system10.1016/j.elecom.2020.106665 ↗
24. In-situ monitoring of real-time loop-mediated isothermal amplification with QCM: detecting Listeria monocytogenes10.3390/bios11090308 ↗
25. Multiplexed detection of pathogens using solid-phase loop-mediated isothermal amplification on a supercritical angle fluorescence array for point-of-care applications10.1021/acssensors.2c01337 ↗
26. Review: a comprehensive summary of a decade development of the recombinase polymerase amplification10.1039/C8AN01621F ↗
27. Recombinase polymerase amplification: basics, applications and recent advances10.1016/j.trac.2017.10.015 ↗
28. Chip-based and wearable tools for isothermal amplification and electrochemical analysis of nucleic acids10.3390/chemosensors10070278 ↗
29. Combination of ferrocene decorated gold nanoparticles and engineered primers for the direct reagentless determination of isothermally amplified DNA10.1007/s00604-021-04771-8 ↗
30. Rapid, single-cell electrochemical detection of Mycobacterium tuberculosis using colloidal gold nanoparticles10.1021/acs.analchem.5b03121 ↗
31. On-gold recombinase polymerase primer elongation for electrochemical detection of bacterial genome: mechanism insights and influencing factors10.1002/celc.201801208 ↗
32. Solid-phase recombinase polymerase amplification using an extremely low concentration of a solution primer for sensitive electrochemical detection of hepatitis B viral DNA10.1016/j.bios.2021.113065 ↗
33. Enhanced solid-phase recombinase polymerase amplification and electrochemical detection10.1007/s00216-017-0269-y ↗
34. Surface coupling of oligo-functionalized dendrimers to detect DNA mutations after blocked isothermal amplification10.1016/j.microc.2021.106546 ↗
35. Pulsed-force-mode AFM studies of polyphenylene dendrimers on self-assembled monolayers10.1021/jp073388u ↗
36. Dendrimers integrated biosensors for healthcare applications10.1016/B978-0-12-813855-7.00010-6 ↗
37. In situ plant virus nucleic acid isothermal amplification detection on gold nanoparticle-modified electrodes10.1021/acs.analchem.9b00340 ↗
38. Sensitive electrochemical biosensor combined with isothermal amplification for point-of-care COVID-19 tests10.1016/j.bios.2021.113168 ↗
39. Solid-phase primer elongation using biotinylated dNTPs for the detection of a single nucleotide polymorphism from a fingerprick blood sample10.1021/acs.analchem.1c03419 ↗
40. Parallel solid-phase isothermal amplification and detection of multiple DNA targets in microliter-sized wells of a digital versatile disc10.1007/s00604-016-1745-3 ↗
41. Solid-phase recombinase polymerase amplification using ferrocene-labelled dNTPs for electrochemical detection of single nucleotide polymorphisms10.1016/j.bios.2021.113825 ↗
42. Electrochemical detection of oxacillin resistance using direct-labeling solid-phase isothermal amplification10.1021/acssensors.1c01688 ↗
43. Electrochemical detection of single-nucleotide polymorphism associated with rifampicin resistance in Mycobacterium tuberculosis using solid-phase primer elongation with ferrocene-linked redox-labeled nucleotides10.1021/acssensors.1c01710 ↗
44. Genosensor for detecting single-point mutations in dendron chip after blocked recombinase polymerase amplification10.1039/D2AN00160H ↗
45. Protein or ribonucleoprotein-mediated blocking of recombinase polymerase amplification enables the discrimination of nucleotide and epigenetic differences between cell populations10.1038/s42003-021-02503-5 ↗
46. PrimedRPA: primer design for recombinase polymerase amplification assays10.1093/bioinformatics/bty701 ↗
47. Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia10.1126/science.2999980 ↗
48. Helicase-dependent isothermal DNA amplification10.1038/sj.embor.7400200 ↗
49. Loop-mediated isothermal amplification of DNA10.1093/nar/28.12.e63 ↗
50. DNA detection using recombination proteins10.1371/journal.pbio.0040204 ↗
51. Engineered helicase replaces thermocycler in DNA amplification while retaining desired PCR characteristics10.1038/s41467-022-34076-0 ↗
52. Fabrication of wearable PDMS device for rapid detection of nucleic acids via recombinase polymerase amplification operated by human body heat10.3390/bios12020072 ↗
53. Strand Invasion Based Amplification (SIBA®): a novel isothermal DNA amplification technology demonstrating high specificity and sensitivity for a single molecule of target analyte10.1371/journal.pone.0112656 ↗