journal article·2019-02-20Open access

Substituent Effects in the Crystal Packing of Derivatives of 4′-Phenyl-2,2′:6′,2″-Terpyridine

Y. Maximilian Klein, Alessandro Prescimone, Mariia Karpacheva, Edwin C. Constable, Catherine E. Housecroft

Crystals· Volume 9· Issue 2

Abstract

We report the preparation of a series of new 4′-substituted 2,2′:6′,2″-terpyridines: 4′-(3,5-dimethylphenyl)-2,2′:6′,2″-terpyridine (2), 4′-(3-fluoro-5-methylphenyl)-2,2′:6′,2″-terpyridine (3), 4′-(3,5-difluorophenyl)-2,2′:6′,2″-terpyridine (4), and 4′-(3,5- bis(trifluoromethyl)phenyl)-2,2′:6′,2″-terpyridine (5). The compounds have been characterized by mass spectrometry, solid-state IR spectroscopy and solution NMR and absorption spectroscopies. The single-crystal X-ray diffraction structures of 3, 5 and 6·EtOH (6 = 4′-(3,5-bis(tert-butyl)phenyl)-2,2′:6′,2″-terpyridine) have been elucidated. The molecular structures of the compounds are unexceptional. Since 3 and 5 crystallize without lattice solvent, we are able to understand the influence of introducing substituents in the 4′-phenyl ring and compare the packing in the structures with that of the previously reported 4′-phenyl-2,2′:6′,2″-terpyridine (1). On going from 1 to 3, face-to-face π-stacking of pairs of 3-fluoro-5-methylphenyl rings contributes to a change in packing from a herringbone assembly in 1 with no ring π-stacking to a layer-like packing. The latter arises through a combination of π-stacking of aromatic rings and N…H–C hydrogen bonding. On going from 3 to 5, N…H–C and F…H–C hydrogen-bonding is dominant, supplemented by π-stacking interactions between pairs of pyridine rings. A comparison of the packing of molecules of 6 with that in 1, 3 and 5 is difficult because of the incorporation of solvent in 6·EtOH.
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Research context

OpenAlex topics: Crystallography and molecular interactions · Crystal structures of chemical compounds · Molecular Sensors and Ion Detection

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Affiliations

Department of Chemistry, University Basel, BPR 1096, Mattenstrasse 24a, CH-4058 Basel, Switzerland

Funding

Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung · University of Basel

References (42)

Show source-provided references
1. Crystal Engineering: From Molecule to Crystal10.1021/ja403264c ↗
2. Desiraju, G., and Steiner, T. (1999). The Weak Hydrogen Bond in Structural Chemistry and Biology, Oxford University Press.
3. Grabowski, S.J. (2016). [FHF]−—The Strongest Hydrogen Bond under the Influence of External Interactions. Crystals, 6.10.3390/cryst6010003 ↗
5. Atwood, J.L. (2017). Hydrogen bonding in molecular crystals. Comprehensive Supramolecular Chemistry II, Elsevier. Chapter 7.03.
6. CH/π hydrogen bonds in crystals10.1039/b313104a ↗
7. Suezawa, H., Yoshida, T., Umezawa, Y., Tsuboyama, S., and Nishio, M. (2002). CH/π Interactions Implicated in the Crystal Structure of Transition Metal Compounds—A Database Study. Eur. J. Inorg. Chem., 3148–3155.10.1002/1099-0682(200212)2002:12<3148::AID-EJIC3148>3.0.CO;2-X ↗
8. It Isn’t, It Is: The C–H…X (X = O, N, F, Cl) Interaction Really is Significant in Crystal Packing10.1021/acs.cgd.6b00736 ↗
9. Building Blocks of Crystal Engineering: A Large Database Study of the Intermolecular Approach between C–H Donor groups and O, N, Cl, or F Acceptors in Organic Crystals10.1021/acs.cgd.6b00305 ↗
10. On the significance of weak hydrogen bonds in crystal packing: A large databank comparison of polymorphic structures10.1039/C8CE00674A ↗
11. Repulsion–dispersion parameters for the modelling of organic molecular crystals containing N, O, S and Cl10.1039/C8FD00064F ↗
12. Crystal structure prediction is changing from basic science to applied technology10.1039/C8FD00033F ↗
13. Is zeroth order crystal structure prediction (CSP_0) coming to maturity? What should we aim for in an ideal crystal structure prediction code?10.1039/C8FD00121A ↗
14. Why don’t we find more polymorphs?
15. From crystal structure prediction to polymorph prediction: Interpreting the crystal energy landscape10.1039/b719351c ↗
16. 2,2′:6′,2″-Terpyridines: From chemical obscurity to common supramolecular motifs10.1039/B601166G ↗
17. The coordination chemistry of 2,2′:6′,2″-terpyridine and higher oligopyridines10.1016/S0898-8838(08)60240-8 ↗
18. Divergent 4,2′:6′,4″- and 3,2′:6′,3″-terpyridines as linkers in 2- and 3-dimensional architectures10.1039/C5CE01364J ↗
19. Tetratopic bis(4,2′:6′,4″-terpyridine) and bis(3,2′:6′,3″-terpyridine) ligands as 4-connecting nodes in 2D-coordination networks and 3D-frameworks10.1007/s10904-017-0671-0 ↗
20. Hunter, C.A., Lawson, K.R., Perkins, J., and Urch, C.J. (2001). Aromatic Interactions. J. Chem. Soc. Perkin Trans. 2, 651–669.10.1039/b008495f ↗
21. Janiak, C. (2000). A critical account on π–π stacking in metal complexes with aromatic nitrogen-containing ligands. Dalton Trans., 3885–3896.10.1039/b003010o ↗
22. Crystal packing in metal complexes of 4′-phenylterpyridine and related ligands: Occurrence of the 2D and 1D terpy embrace arrays10.1039/b821883h ↗
23. Alternative two-dimensional embrace nets formed by metal complexes of 4′-phenylterpyridine crystallised with hydrophilic anions10.1039/c003035j ↗
24. The coordination chemistry of 4′-phenyl-2,2′:6′,2″-terpyridine; the synthesis, crystal and molecular structures of 4′-phenyl-2,2′:6′,2″-terpyridine and bis(4′-phenyl-2,2′:6′,2″-terpyridine)nickel(II) chloride decahydrate10.1016/S0020-1693(00)88132-3 ↗
25. Kröhnke reaction in aqueous media: One-pot clean synthesis of 4′-aryl-2,2′:6′,2″-terpyridines10.1016/j.tet.2006.10.069 ↗
26. Directing role of functional groups in selective generation of C–H⋯π interactions: In situ cryo-crystallographic studies on benzyl derivatives10.1039/c001190h ↗
27. Solid hexafluorobenzene I. The crystal structure at 120 K10.1080/00268977300100101 ↗
28. C–halogen···π interactions and their influence on molecular conformation and crystal packing: A database study10.1016/S1463-0184(00)00035-6 ↗
29. An X-ray single-crystal study of the molecular system C6F6.C6D610.1107/S0567740882007687 ↗
30. Structure of the Lowest Temperature Phase of the Solid Benzene–Hexafluorobenzene Adduct10.1002/anie.199216551 ↗
31. Fluorine in crystal engineering—“The little atom that could”10.1039/B406892K ↗
32. Organic fluorine compounds: A great opportunity for enhanced materials properties10.1039/c0cs00221f ↗
33. Wang, J., and Hanan, G.S. (2005). A facile route to sterically hindered and non-hindered 4′-aryl-2,2′:6′,2″-terpyridines. Synlett, 1251–1254.10.1055/s-2005-868481 ↗
34. Synthesis and photophysical properties of iridium(III) bisterpyridine and its homologues: A family of complexes with a long-lived excited state10.1021/ja9833669 ↗
35. (2006). APEX2, Version 2 User Manual, M86-E01078, Bruker Analytical X-ray Systems Madison Inc.
36. SUPERFLIP—A computer program for the solution of crystal structures by charge flipping in arbitrary dimensions10.1107/S0021889807029238 ↗
37. CRYSTALS Version 12: Software for Guided Crystal Structure Analysis10.1107/S0021889803021800 ↗
38. OLEX2: A complete structure solution, refinement and analysis program10.1107/S0021889808042726 ↗
39. Mercury: Visualization and analysis of crystal structures10.1107/S002188980600731X ↗
40. Mercury CSD 2.0—New Features for the Visualization and Investigation of Crystal Structures10.1107/S0021889807067908 ↗
41. The Cambridge Structural Database10.1107/S2052520616003954 ↗
42. Emsley, J. (1998). The Elements, Clarendon Press. [3rd ed.].