Advances in Machine Learning-Assisted Optical Sensing Arrays for Disease Diagnosis
Source abstract
Abstract
Optical sensing arrays have emerged as transformative tools for disease diagnosis, offering low-cost, rapid, and multiplexed fingerprint detection capabilities. However, the high-dimensional and complex data generated by these arrays pose significant challenges for conventional analytical methods. The integration of machine learning (ML) has advanced this field by enabling automated feature extraction, robust pattern recognition, and accurate disease classification. This review provides a systematic overview of ML-reinforced optical sensing arrays, with a particular focus on three major modalities: colorimetric, fluorescent, and surface-enhanced Raman scattering (SERS) sensor arrays. We critically evaluate how ML algorithms—encompassing unsupervised, supervised, and deep learning paradigms—synergistically enhance the diagnostic performance of each sensor modality. Representative applications are highlighted, demonstrating high accuracy in detecting cancers and infectious diseases. Finally, we discuss the pressing challenges related to data standardization, model interpretability, and clinical translation, while outlining future directions toward intelligent, point-of-care, and personalized diagnostic systems.
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Research context
SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.
Affiliations
College of Life Sciences, Zhuhai College of Science and Technology, Zhuhai 519040, China
College of Chemistry, Jilin University, Changchun 130012, China
Department of Economics and Management, Guangdong Technical College of Water Resources and Electric Engineering, Guangzhou 510925, China
Funding
Zhuhai College of Science and Technology · Key Technologies R&D Program of Guangdong Province · Guangdong Provincial Department of Education Special Project in Key Areas of Biomedicine and Health · Engineering Technology Research Center for the Utilization of Functional Components of Natural Products in Plants, Guangdong Province Regular University
References (100+)
Show source-provided references
1. Sathyavathy, G., Manimegalai, P., and Umamakeswari, G. (2024). Global Burden of Diseases: Emerging NCDs Burden and Epidemiological Transition, Nature Light Publication.
2. Progress and Prospects of Early Detection in Lung Cancer10.1098/rsob.170070 ↗
3. Zhou, B., Chen, Z., Zhu, H., Chen, B., Fang, J., and Jin, X. (2026). Impact of Molecular Rapid Diagnostic Testing on Clinical Outcomes in Bloodstream Infections: A Meta-Analysis. BMC Infect. Dis., 26.10.1186/s12879-026-13144-6 ↗
4. Miniaturized Biomimetic Taste-Smell Fusion Sensor Array for Rapid and Simultaneous Profiling of Volatile and Non-Volatile Blood Plasma Constituents toward Identification of Head and Neck Carcinoma and Breast Cancer10.1016/j.cej.2025.171538 ↗
5. Transfer Learning Enhanced Blood Pressure Monitoring Based on Flexible Optical Pulse Sensing Patch10.1021/acssensors.4c03404 ↗
6. The Role of the Clinical Laboratory in Diagnostic Stewardship and Population Health10.1093/jalm/jfae113 ↗
7. Machine Learning-Assisted Liquid Crystal Optical Sensor Array Using Cysteine-Functionalized Silver Nanotriangles for Pathogen Detection in Food and Water10.1021/acsami.4c19722 ↗
8. Design and Performance Analysis of Metal-Dielectric Mid-Infrared Refractive Index Sensor with Machine Learning Algorithm for Detecting Anemia and Cancer Cell10.1016/j.ijleo.2026.172777 ↗
9. A Review on the Applications of Machine Learning in Biomaterials, Biomechanics, and Biomanufacturing for Tissue Engineering
10. A Review of Deep Learning in Medical Imaging: Imaging Traits, Technology Trends, Case Studies with Progress Highlights, and Future Promises10.1109/JPROC.2021.3054390 ↗
11. Machine Learning–Driven Nanoparticle–Enhanced Paper Chromogenic Array Sensor Approach for Detecting Sub-Lethally Injured Salmonella in Low Moisture Food10.1016/j.foodres.2026.118523 ↗
12. Machine-Learning-Enabled Starch/MXene Moisture Sensing Bioelectronics for Human Monitoring and Interaction10.1016/j.cej.2026.175121 ↗
13. Advancement of Machine Learning Algorithms in Biosensors10.1016/j.cca.2025.120677 ↗
14. Machine Learning Tools to Assist the Synthesis of Antibacterial Carbon Dots10.2147/IJN.S451680 ↗
15. Machine Learning–Empowered Smartphone Platforms for Sustainable Point-of-Care Bacterial Detection10.1016/j.talanta.2026.129901 ↗
16. Machine Learning-Assisted Arginine Modified Copper Nanozyme Sensing Array for Detection of Antioxidant Phenolics10.1016/j.microc.2026.117287 ↗
17. Machine-Learning-Assisted Microfluidic Nanoplasmonic Digital Immunoassay for Cytokine Storm Profiling in COVID-19 Patients10.1021/acsnano.1c06623 ↗
18. Improving Clinical Diagnostics and Patient Care through Artificial Intelligence and Biosensor Technologies10.1021/acsomega.5c06072 ↗
19. Machine Learning-Assistant Colorimetric Sensor Arrays for Intelligent and Rapid Diagnosis of Urinary Tract Infection10.1021/acssensors.3c02687 ↗
20. Machine Learning-Assisted SERS-Based Dual-Aptamer Biosensor for Ultrasensitive Clinical Screening of Breast Cancer10.1016/j.saa.2025.126640 ↗
21. An Automated DNA Computing Platform for Rapid Etiological Diagnostics10.1126/sciadv.ade0453 ↗
22. DNA-Mediated Bioinspired MXene Gas Sensor Array with Machine Learning for Noninvasive Cancer Recognition10.1021/acsnano.5c06893 ↗
23. Machine Learning Integration in Optical Sensing: Trends, Challenges, and Biomedical Applications10.1109/SR.2025.3603142 ↗
24. Recent Advances of Surface Enhanced Raman Spectroscopy (SERS) in Optical Biosensing10.1016/j.trac.2024.117990 ↗
25. The Optoelectronic Nose10.1021/acs.accounts.0c00671 ↗
26. Food for Thought: Optical Sensor Arrays and Machine Learning for the Food and Beverage Industry10.1021/acssensors.4c00252 ↗
27. High Spatiotemporal Precision Mapping of Optical Nanosensor Array Using Machine Learning10.1021/acssensors.4c01763 ↗
28. An Intelligent Nanozyme-Enhanced Triple-Modal Detection Platform Integrated with Machine Learning for Self-Validating Pathogen Monitoring10.1016/j.snb.2025.139401 ↗
29. A Multifunctional Pt/DMSN Nanozyme-Based Colorimetric-Fluorescence Sensing Platform for Breast Cancer Detection10.1007/s00604-025-07082-4 ↗
30. Perovskite Quantum Dot-Based Fluorescent Sensor Array Coupled with Machine Learning for Rapid Pathogenic Bacteria Detection and Identification10.1016/j.cej.2025.167280 ↗
31. Fluorescent Nanozyme Based on Bimetallic Fe/Co-Doped Carbon Dots for Dual-Mode Detection of Ascorbic Acid and Hydrogen Peroxide10.1021/acs.analchem.5c02107 ↗
32. Indolizine-Based Fluorescent Compounds Array for Noninvasive Monitoring of Glucose in Bio-Fluids Using on-Device Machine Learning10.1016/j.dyepig.2023.111287 ↗
33. Enhancing Nanomaterial-Based Optical Spectroscopic Detection of Cancer through Machine Learning10.1021/acsmaterialslett.4c01267 ↗
34. Ultrasensitive Detection of Blood-Based Alzheimer’s Disease Biomarkers: A Comprehensive SERS-Immunoassay Platform Enhanced by Machine Learning10.1021/acschemneuro.4c00369 ↗
35. Deep Learning-Enabled Raman Spectroscopic Identification of Pathogen-Derived Extracellular Vesicles and the Biogenesis Process10.1021/acs.analchem.2c02226 ↗
36. Artificial Intelligence-Assisted Identification and Validation of Anti-Aging Biomarkers
37. Wasilewski, T., Kamysz, W., and Gębicki, J. (2024). AI-Assisted Detection of Biomarkers by Sensors and Biosensors for Early Diagnosis and Monitoring. Biosensors, 14.10.3390/bios14070356 ↗
38. Machine Learning-Supported Sensor Array for Multiplexed Foodborne Pathogenic Bacteria Detection and Identification10.1016/j.tifs.2024.104787 ↗
39. Machine Learning-Assisted Regulator-Mediated Single Nanozyme Sensor Array Rapid Detection of Proteins and Nutritional Supplements10.1016/j.snb.2025.139188 ↗
40. Advances in Machine Learning Processing of Big Data from Disease Diagnosis Sensors10.1021/acssensors.3c02670 ↗
41. Kangas, M.J., Burks, R.M., Atwater, J., Lukowicz, R.M., Garver, B., and Holmes, A.E. (2018). Comparative Chemometric Analysis for Classification of Acids and Bases via a Colorimetric Sensor Array. J. Chemom., 32.10.1002/cem.2961 ↗
42. An Outlier Removal Method Based on PCA-DBSCAN for Blood-SERS Data Analysis10.1039/D3AY02037A ↗
43. Single-Molecule SERS Detection of Phosphorylation in Serine and Tyrosine Using Deep Learning-Assisted Plasmonic Nanopore10.1021/acs.jpclett.5c01753 ↗
44. Multiplexed Surface Protein Detection and Cancer Classification Using Gap-Enhanced Magnetic–Plasmonic Core–Shell Raman Nanotags and Machine Learning Algorithm10.1021/acsami.3c13921 ↗
45. A Scaffold-Assisted 3D Cancer Cell Model for Surface-Enhanced Raman Scattering-Based Real-Time Sensing and Imaging10.1021/acsnano.4c00543 ↗
46. A Single-Cell Metabolic Profiling Characterizes Human Aging via SlipChip-SERS10.1002/advs.202406668 ↗
47. Integrated Breath Analysis Technologies: Current Advances and Future Prospects10.1016/j.trac.2024.118048 ↗
48. FRET Cascade miRNA Addition Probe from Non-Crosstalk DNA Photonic Wire Assisted with Clustering Algorithm for Early Diagnosis of Acute Myocardial Infarction10.1016/j.bios.2023.115080 ↗
49. Joshi, P., and Mondal, P.P. (2021). Single-Molecule Clustering for Super-Resolution Optical Fluorescence Microscopy. Photonics, 9.10.3390/photonics9010007 ↗
50. Lalman, C., Yang, Y., and Walker, J.L. (2025). Artificial Intelligence in Ocular Transcriptomics: Applications of Unsupervised and Supervised Learning. Cells, 14.10.3390/cells14171315 ↗
51. Integrated Colorimetric Immunoassay for PSA Using Confined Pt Nanozymes and Smartphone-Assisted Machine Learning Analysis10.1016/j.snb.2025.138565 ↗
52. A Three-Channel Nanozyme Sensor Array Combined with Machine Learning Algorithm for the Differentiation and Detection of Aminoglycoside Antibiotics10.1016/j.cej.2025.167711 ↗
53. Machine Learning-Assisted Colorimetric Sensor Array Based on Laccase-like Nanozymes for Identification of Eleven Halogenated Phenolic Pollutants over a Wide Concentration Range10.1016/j.microc.2025.116673 ↗
54. Machine Learning-Assisted Plasmonic Sensing Using Au@Ag–Ti3C2Tx MXene/Au Hybrid Interfaces for High-Efficiency and Ultrasensitive microRNA Detection10.1016/j.bios.2026.118645 ↗
55. Artificial Intelligence for Biomarker Discovery in Alzheimer’s Disease and Dementia10.1002/alz.13390 ↗
56. Machine Learning-Assisted Janus Colorimetric Face Mask for Breath Ammonia Analysis10.1021/acs.analchem.3c04383 ↗
57. Kumar, B.N., Kallam, S., Sharan, P., and Kumaresan, M. (2025). Integrating Deep Learning with Photonic SPR Biosensors for Pathogen and Biomarker Detection. Proceedings of the 2025 12th International Conference on Computing for Sustainable Global Development (INDIACom), Delhi, India, 2 April 2025, IEEE.10.23919/INDIACom66777.2025.11115708 ↗
58. A Biosensing Method for the Direct Serological Detection of Liver Diseases by Integrating a SERS-Based Sensor and a CNN Classifier10.1016/j.bios.2021.113246 ↗
59. Rapid and Precise Detection of Cancers via Label-Free SERS and Deep Learning10.1007/s00216-023-04730-7 ↗
60. Hayat, M.T., Allawi, Y.M., Alamro, W., Sultan, S.M., Abadleh, A., Kang, H., and Zreikat, A.I. (2025). A Hybrid Convolutional Neural Network–Long Short-Term Memory (CNN–LSTM)–Attention Model Architecture for Precise Medical Image Analysis and Disease Diagnosis. Diagnostics, 15.10.3390/diagnostics15212673 ↗
61. The Meaning and Use of the Area under a Receiver Operating Characteristic (ROC) Curve10.1148/radiology.143.1.7063747 ↗
62. Davis, J., and Goadrich, M. (2006). The Relationship Between Precision-Recall and ROC Curves. Proceedings of the 23rd International Conference on Machine Learning—ICML ’06, ACM Press.10.1145/1143844.1143874 ↗
63. A Systematic Analysis of Performance Measures for Classification Tasks10.1016/j.ipm.2009.03.002 ↗
64. Chicco, D., and Jurman, G. (2020). The Advantages of the Matthews Correlation Coefficient (MCC) over F1 Score and Accuracy in Binary Classification Evaluation. BMC Genom., 21.10.1186/s12864-019-6413-7 ↗
65. Yu, K., Lu, S., Qiu, K., Zhang, Y., Sun, A., Gong, S., Wang, K., Gao, X., Xu, X., and Wang, H. (2025). Biomimetic Analysis of Neurotransmitters for Disease Diagnosis through Light-Driven Nanozyme Sensor Array and Machine Learning. Adv. Sci., 12.10.1002/advs.202505333 ↗
66. Nanozyme Sensor Array Plus Solvent-Mediated Signal Amplification Strategy for Ultrasensitive Ratiometric Fluorescence Detection of Exosomal Proteins and Cancer Identification10.1021/acs.analchem.1c02010 ↗
67. An Antibody-Free Liver Cancer Screening Approach Based on Nanoplasmonics Biosensing Chips via Spectrum-Based Deep Learning10.1016/j.impact.2021.100296 ↗
68. Identification of Antibiotic Resistance in ESKAPE Pathogens through Plasmonic Nanosensors and Machine Learning10.1021/acsnano.2c10584 ↗
69. A Spatially Localized DNA Linear Classifier for Cancer Diagnosis10.1038/s41467-024-48869-y ↗
70. Highly Accurate Profiling of Exosome Phenotypes Using Super-Resolution Tricolor Fluorescence Co-Localization10.1021/acsnano.4c00534 ↗
71. Diagnosis of Neuropsychiatric Systemic Lupus Erythematosus by Label-Free Serum Microsphere-Coupled SERS Fingerprints with Machine Learning10.1016/j.bios.2024.116414 ↗
72. Yu, X., Srivastava, S., Huang, S., Hayden, E., Teplow, D., and Xie, Y.-H. (2022). The Feasibility of Early Alzheimer’s Disease Diagnosis Using a Neural Network Hybrid Platform. Biosensors, 12.10.3390/bios12090753 ↗
73. Single-Cell Analysis and Classification According to Multiplexed Proteins via Microdroplet-Based Self-Driven Magnetic Surface-Enhanced Raman Spectroscopy Platforms Assisted with Machine Learning Algorithms10.1021/acs.analchem.3c01273 ↗
74. Surface-Enhanced Raman Scattering-Based Surface Chemotaxonomy: Combining Bacteria Extracellular Matrices and Machine Learning for Rapid and Universal Species Identification10.1021/acsnano.3c09101 ↗
75. Paper-Based Multiplexed Colorimetric Biosensing of Cardiac and Lipid Biomarkers Integrated with Machine Learning for Accurate Acute Myocardial Infarction Early Diagnosis and Prognosis10.1016/j.snb.2023.134403 ↗
76. Graphene-Based Refractive Index Sensor Using Machine Learning for Detection of Mycobacterium Tuberculosis Bacteria10.1109/TNB.2022.3155264 ↗
77. Improved Method for Stress Detection Using Bio-Sensor Technology and Machine Learning Algorithms10.1016/j.mex.2024.102581 ↗
78. Recent Advances in Metal-Organic Framework-Based Nanozymes for Cancer Theranostics Driven by Synthetic Innovation and Machine Learning Design10.1016/j.colsurfb.2026.115463 ↗
79. Fabrication of MOF-Based Nanozyme Sensor Arrays and Their Application in Disease Diagnosis10.1016/j.ccr.2025.216506 ↗
80. A Novel Intelligent Sensing Strategy: Integration of Metal-Doped Carbon Dots Nanozymes and Machine Learning for Rapid Screening of Biothiols in Disease10.1016/j.snb.2025.138304 ↗
81. Machine Learning-Enabled Microfluidic Ratiometric Fluorescence Sensor Array Based on Lanthanide-Gold Nanoclusters for Visual Detection of Multicomponent Antibiotics10.1016/j.bios.2025.118109 ↗
82. A New Strategy for Microbial Taxonomic Identification through Micro-Biosynthetic Gold Nanoparticles and Machine Learning10.1002/adma.202109365 ↗
83. Recent Advances in Sensor Arrays Aided by Machine Learning for Pathogen Identification10.1039/D4SD00229F ↗
84. Chemical Nose Strategy with Metabolic Labeling and “Antibiotic-Responsive Spectrum” Enables Accurate and Rapid Pathogen Identification10.1021/acs.analchem.3c04469 ↗
85. Statistical Learning-Assisted Dual-Signal Sensing Arrays Based on Conjugated Molecules for Pathogen Detection and Identification10.1021/acsami.5c08450 ↗
86. Machine Learning Supported Single-Stranded DNA Sensor Array for Multiple Foodborne Pathogenic and Spoilage Bacteria Identification in Milk10.1016/j.foodchem.2024.141115 ↗
87. Optical Biosensors for Detection of Exosomes10.1016/j.cca.2025.120704 ↗
88. Advances in Exosome Plasmonic Sensing: Device Integration Strategies and AI-Aided Diagnosis10.1016/j.bios.2024.116718 ↗
89. AI-Enabled New Sensing Technology: Colorimetric Analysis of Exosomes for Precise Diagnosis of Breast Cancer10.1039/D5SC06650F ↗
90. Metabolic Fingerprint-Mediated Chemical Nose Strategy: Precise Identification of Foodborne Bacteria Based on a 4-MU Derivative Fluorescence Array10.1021/acs.analchem.5c07248 ↗
91. Yu, Y., Ni, W., Hu, Q., Li, H., Zhang, Y., Gao, X., Zhou, L., Zhang, S., Ma, S., and Zhang, Y. (2024). A Dual Fluorescence Turn-On Sensor Array Formed by Poly(Para -aryleneethynylene) and Aggregation-Induced Emission Fluorophores for Sensitive Multiplexed Bacterial Recognition. Angew. Chem. Int. Ed., 63.10.1002/anie.202318483 ↗
92. Multimodal SERS Biosensing Platforms: Emerging Opportunities for Ultrasensitive Biomarker Detection and Intelligent Diagnostics10.1021/acssensors.5c04741 ↗
93. Advances in SERS Technology for Molecular Immunophenotyping10.1016/j.trac.2025.118522 ↗
94. Machine Learning-Enhanced SERS Diagnostics: Accelerating the AI-Powered Transition from Laboratory Discoveries to Clinical Practice10.1016/j.compbiomed.2025.110490 ↗
95. SERS–AI for Biomedical Applications: From Single Spectrum to Multidimensional Analysis10.1016/j.trac.2026.118965 ↗
96. Machine Learning-Based Label-Free SERS Profiling of Exosomes for Accurate Fuzzy Diagnosis of Cancer and Dynamic Monitoring of Drug Therapeutic Processes10.1021/acs.analchem.3c00026 ↗
97. Aptamers and Antibodies in Optical Biosensing10.1007/s44371-025-00094-2 ↗
98. Molecular Imprinting-Based Pseudo-ELISA: Recent Advances10.1039/D6AN00275G ↗
99. Exploring the Diagnostic Landscape: Portable Aptasensors in Point-of-Care Testing10.1016/j.ab.2025.115788 ↗
100. Integrating Aptamers- and Molecularly Imprinted Polymers in Biosensing Platforms for Cancer Biomarker Detection: Trends and Perspectives10.1016/j.trac.2026.118923 ↗