journal article·2021-06Open access

Polymer informatics: Expert-in-the-loop in QSPR modeling of refractive index

Santiago A. Schustik, Fiorella Cravero, Ignacio Ponzoni, Mónica F. Díaz

Abstract

Abstract Refractive index (RI) is a highly relevant property for the design of new polymeric materials for very specific applications in the telecommunications industry, medicine, and analytical chemistry, among many others. A particular case is that of plastic optical fibers, in which the information is transmitted by photons and then RI takes center stage. Therefore, the modeling and prediction of this property play a key role when characterizing and designing materials for these important industries. Over the last decades, the use of Machine Learning (ML) algorithms in the modeling of properties for the design of new materials has been consolidated thanks to the gradual increase in the available databases. In particular, the development of Quantitative Structure-Property Relationship (QSPR) models has benefited from these emerging technologies, providing the possibility of generating in silico testing strategies applicable to the early stages of the design of new materials. However, in many cases, it has been observed that using ML algorithms in a fully automatic way, without human intervention in the QSPR model design process, tend to generate black-box models that have a difficult interpretation and can lose sight about relevant aspects that require both criteria and an expert’s knowledge in the chemical domain. For this reason, interactive ML methodologies that combine computational outputs with experts’ knowledge, usually known as expert-in-the-loop strategies, are becoming more frequent. In this article, we present the design of QSPR models for RI modeling following two different approaches, a black-box ML methodology and an Interactive Machine Learning (IML) methodology with expert-in-the-loop, from a database whose curation is also described in the present work. In this regard, visual analytics strategies were used to capture the expert’s knowledge, facilitating an effective and rapid interaction between the outputs provided by ML and the chemical analyst. In addition, we contrast the best models obtained by both approaches against two other predictive models for RI estimation reported in the literature, achieving promising performances in terms of cardinality and accuracy when the expert interacts during modeling. In summary, the obtained results allow us to claim that the expert-in-the-loop approach provides QSPR models with better generalizability properties and more interpretable from a physicochemical point of view, without losing accuracy. Finally, in addition to providing high quality QSPR models to predict the RI of polymeric materials, the present work lays the foundation for defining an effective methodology to incorporate experts’ knowledge in the design of other material properties.
Source: openaire · Quality: candidate unverified · Source record ↗

Research context

OpenAlex topics: Computational Drug Discovery Methods · Machine Learning in Materials Science · Data Visualization and Analytics

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

References (39)

Show source-provided references
1. Plastic Optical Fibres (POF)
2. Fabrication of polycarbonate polymer optical fibre core via extrusion method: the role of temperature gradient and collector speed on its characteristics10.1016/j.yofte.2020.102162 ↗
3. Recent trends and advances of fibre Bragg grating sensors in CYTOP polymer optical fibres10.1016/j.yofte.2019.102079 ↗
4. Carraher · 2016
5. Intrinsic high refractive index polymers: intrinsic high refractive index polymers10.1002/pi.4821 ↗
6. Polymer informatics: opportunities and challenges10.1021/acsmacrolett.7b00228 ↗
7. A refractive index study of a diverse set of polymeric materials by QSPR with quantum-chemical and additive descriptors10.3390/molecules25173772 ↗
8. QSPR models for predicting of the melting points and refractive indices for inorganic substances: components of the optical film-forming materials
9. Opportunities and challenges for machine learning in materials science10.1146/annurev-matsci-070218-010015 ↗
10. Bicerano · 2002 · 321
11. Prediction of refractive indices of linear polymers by a four-descriptor QSPR model10.1016/j.polymer.2004.10.057 ↗
12. Linear and nonlinear QSPR models to predict refractive indices of polymers from cyclic dimer structures10.1016/j.chemolab.2008.02.006 ↗
13. Prediction of refractive index of polymers using artificial neural networks10.1021/je100885f ↗
14. QSPR studies on refractive indices of structurally heterogeneous polymers10.1016/j.chemolab.2014.11.008 ↗
15. Refractive indices of diverse data set of polymers: a computational QSPR based study10.1016/j.commatsci.2017.05.022 ↗
16. QSPR modeling of the refractive index for diverse polymers using 2D descriptors10.1021/acsomega.8b01834 ↗
17. Refractive index prediction models for polymers using machine learning10.1063/5.0008026 ↗
18. Expert-in-the-loop AI for polymer discovery
19. Impact of chemist-in-the-loop molecular representations on machine learning outcomes10.1021/acs.jcim.0c00193 ↗
20. Chemist versus Machine: traditional knowledge versus machine learning techniques
21. Predictions of high-order electric properties of molecules: can we benefit from machine learning?10.1021/acsomega.9b04339 ↗
22. Prediction of elongation at break for linear polymers10.1016/j.chemolab.2014.09.009 ↗
23. Computational modelling of mechanical properties for new polymeric materials with high molecular weight10.1016/j.chemolab.2019.103851 ↗
24. Computer-aided design of polymeric materials: computational study for characterization of databases for prediction of mechanical properties under polydispersity10.1016/j.chemolab.2019.06.006 ↗
25. Feature selection for polymer informatics: evaluating scalability and robustness of the FS4RV DD algorithm using synthetic polydisperse data sets10.1021/acs.jcim.9b00867 ↗
26. Van Krevelen D.W., Properties of Polymers (2009), fourth ed. Elsevier, Amsterdam, The Netherlands.
27. A Database curation for prediction of the refractive index in the virtual testing of polymeric materials by using machine learning
28. Sigma-Aldrich Product Catalog. “Polymer Science”, https://www.sigmaaldrich.com/materials-science/polymer-science, last accessed 2020/8/6.
29. PubChem 2019 update: improved access to chemical data10.1093/nar/gky1033 ↗
30. Scientific Polymer, Inc. Refractive Index of Polymers by Index. https://scientificpolymer.com/technical-library/refractive-index-of-polymers-by-index/, last accessed 2020/12/2.
31. DRAGON for Windows (Software for Molecular Descriptor Calculations), Version 5.5; Talete srl: Milan, Italy, 2007.
32. The WEKA data mining software: an update10.1145/1656274.1656278 ↗
33. A guided analytics tool for feature selection in steel manufacturing with an application to blast furnace top gas efficiency10.1016/j.commatsci.2020.110053 ↗
34. Leakage in data mining: formulation, detection, and avoidance10.1145/2382577.2382579 ↗
35. Visual analytics in cheminformatics: user-supervised descriptor selection for QSAR methods10.1186/s13321-015-0092-4 ↗
36. Be aware of error measures. Further studies on validation of predictive QSAR models10.1016/j.chemolab.2016.01.008 ↗
37. y-Randomization and its variants in QSPR/QSAR10.1021/ci700157b ↗
38. Chance correlations in structure-activity studies using multiple regression analysis10.1021/jm00280a017 ↗
39. PaDEL-descriptor: an open source software to calculate molecular descriptors and fingerprints10.1002/jcc.21707 ↗