journal article·2022-11Open access

On the value of popular crystallographic databases for machine learning prediction of space groups

Vishwesh Venkatraman, Patricia Almeida Carvalho

Acta Materialia· Volume 240

Abstract

Predicting crystal structure information is a challenging problem in materials science that clearly benefits from artificial intelligence approaches. The leading strategies in machine learning are notoriously data-hungry and although a handful of large crystallographic databases are currently available, their predictive quality has never been assessed. In this article, we have employed composition-driven machine learning models, as well as deep learning, to predict space groups from well known experimental and theoretical databases. The results generated by comprehensive testing indicate that data-abundant repositories such as COD (Crystallography Open Database) and OQMD (Open Quantum Materials Database) do not provide the best models even for heavily populated space groups. Classification models trained on databases such as the Pearson Crystal Database and ICSD (Inorganic Crystal Structure Database), and to a lesser extent the Materials Project, generally outperform their data-richer counterparts due to more balanced distributions of the representative classes. Experimental validation with novel high entropy compounds was used to confirm the predictive value of the different databases and showcase the scope of the machine learning approaches employed.
Source: openalex_inverted_index · Quality: baseline

Research context

OpenAlex topics: Machine Learning in Materials Science · Computational Drug Discovery Methods · X-ray Diffraction in Crystallography

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

References (70)

Show source-provided references
1. Experiment design frameworks for accelerated discovery of targeted materials across scales10.3389/fmats.2019.00082 ↗
2. Data-driven materials science: status, challenges, and perspectives10.1002/advs.201900808 ↗
3. Commentary: the materials project: a materials genome approach to accelerating materials innovation10.1063/1.4812323 ↗
4. The joint automated repository for various integrated simulations (JARVIS) for data-driven materials design10.1038/s41524-020-00440-1 ↗
5. AFLOW: an automatic framework for high-throughput materials discovery10.1016/j.commatsci.2012.02.005 ↗
6. The NOMAD laboratory: from data sharing to artificial intelligence10.1088/2515-7639/ab13bb ↗
7. Recent developments in the inorganic crystal structure database: theoretical crystal structure data and related features10.1107/S160057671900997X ↗
8. Validation of the crystallography open database using the crystallographic information framework10.1107/S1600576720016532 ↗
9. Finding the needle in the haystack: materials discovery and design through computational ab initio high-throughput screening10.1016/j.commatsci.2019.02.040 ↗
10. Electronic-structure methods for materials design10.1038/s41563-021-01013-3 ↗
11. Ab initio molecular dynamics and materials design for embedded phase-change memory10.1038/s41524-021-00496-7 ↗
12. Recent advances and applications of machine learning in solid-state materials science10.1038/s41524-019-0221-0 ↗
13. Machine learning assisted materials design and discovery for rechargeable batteries10.1016/j.ensm.2020.06.033 ↗
14. Machine learning-driven new material discovery10.1039/D0NA00388C ↗
15. Machine learning in materials discovery: confirmed predictions and their underlying approaches10.1146/annurev-matsci-090319-010954 ↗
16. Machine learning and energy minimization approaches for crystal structure predictions: a review and new horizons10.1021/acs.chemmater.7b05304 ↗
17. Structure prediction drives materials discovery10.1038/s41578-019-0101-8 ↗
18. Ab initio thermodynamics of the CoCrFeMnNi high entropy alloy: importance of entropy contributions beyond the configurational one10.1016/j.actamat.2015.08.050 ↗
19. Crystal structure prediction via deep learning10.1021/jacs.8b03913 ↗
20. Accelerating crystal structure prediction by machine-learning interatomic potentials with active learning10.1103/PhysRevB.99.064114 ↗
21. Crystal structure prediction of binary alloys via deep potential10.3389/fchem.2020.589795 ↗
22. 3-D inorganic crystal structure generation and property prediction via representation learning10.1021/acs.jcim.0c00464 ↗
23. Combining machine learning potential and structure prediction for accelerated materials design and discovery10.1021/acs.jpclett.0c02357 ↗
24. Accelerated crystal structure prediction of multi-elements random alloy using expandable features10.1038/s41598-021-84544-8 ↗
25. Using a machine learning approach to determine the space group of a structure from the atomic pair distribution function10.1107/S2053273319005606 ↗
26. CRYSPNet: crystal structure predictions via neural networks
27. Machine learning-based prediction of crystal systems and space groups from inorganic materials compositions10.1021/acsomega.9b04012 ↗
28. Self-referencing embedded strings (SELFIES): a 100% robust molecular string representation10.1088/2632-2153/aba947 ↗
29. Graph networks as a universal machine learning framework for molecules and crystals10.1021/acs.chemmater.9b01294 ↗
30. Crystal symmetry classification from powder x-ray diffraction patterns using a convolutional neural network10.1016/j.mtcomm.2020.101662 ↗
31. Predicting materials properties without crystal structure: deep representation learning from stoichiometry10.1038/s41467-020-19964-7 ↗
32. Materials representation and transfer learning for multi-property prediction10.1063/5.0047066 ↗
33. Composition based crystal materials symmetry prediction using machine learning with enhanced descriptors10.1016/j.commatsci.2021.110686 ↗
34. Mlatticeabc: generic lattice constant prediction of crystal materials using machine learning10.1021/acsomega.1c00781 ↗
35. Compositionally restricted attention-based network for materials property predictions10.1038/s41524-021-00545-1 ↗
36. Pearson’s crystal data: crystal structure database for inorganic compounds (on dvd), release 2020/21, 2021, (ASM International, Materials Park, Ohio, USA). [Accessed: August-2021].
37. Materials design and discovery with high-throughput density functional theory: the open quantum materials database (OQMD)10.1007/s11837-013-0755-4 ↗
38. Nanostructured high-entropy alloys with multiple principal elements: novel alloy design concepts and outcomes10.1002/adem.200300567 ↗
39. Microstructural development in equiatomic multicomponent alloys10.1016/j.msea.2003.10.257 ↗
40. High-entropy alloys10.1038/s41578-019-0121-4 ↗
41. High-entropy ceramics10.1038/s41578-019-0170-8 ↗
42. Using SMILES strings for the description of chemical connectivity in the crystallography open database10.1186/s13321-018-0279-6 ↗
43. Crystallography open database (COD): an open-access collection of crystal structures and platform for world-wide collaboration10.1093/nar/gkr900 ↗
44. The open quantum materials database (OQMD): assessing the accuracy of DFT formation energies10.1038/npjcompumats.2015.10 ↗
45. Electronegativity seen as the ground-state average valence electron binding energy10.1021/jacs.8b10246 ↗
46. Systematization of the stable crystal structure of allAB-type binary compounds: a pseudopotential orbital-radii approach10.1103/PhysRevB.22.5839 ↗
47. Mentel
48. The utility of composition-based machine learning models for band gap prediction10.1016/j.commatsci.2021.110637 ↗
49. Encoding the atomic structure for machine learning in materials science
50. A general-purpose machine learning framework for predicting properties of inorganic materials10.1038/npjcompumats.2016.28 ↗
51. Random forests10.1023/A:1010933404324 ↗
52. Ranger: a fast implementation of random forests for high dimensional data in C++ and R10.18637/jss.v077.i01 ↗
53. R Core Team, R: A language and environment for statistical computing, 2020, (Version 4.2.1). https://www.R-project.org/.
54. Machine learning elastic constants of multi-component alloys10.1016/j.commatsci.2021.110671 ↗
55. FP-ADMET: a compendium of fingerprint-based ADMET prediction models10.1186/s13321-021-00557-5 ↗
56. Sentinel-2 satellite imagery for urban land cover classification by optimized random forest classifier10.3390/app11020543 ↗
57. Random forest modelling of high-dimensional mixed-type data for breast cancer classification10.3390/cancers13050991 ↗
58. Random survival forests for competing risks10.1093/biostatistics/kxu010 ↗
59. mlr: Machine learning in R
60. Multilabel classification with R package mlr10.32614/RJ-2017-012 ↗
61. A systematic analysis of performance measures for classification tasks10.1016/j.ipm.2009.03.002 ↗
62. An experimental comparison of performance measures for classification10.1016/j.patrec.2008.08.010 ↗
63. Data sampling methods to deal with the big data multi-class imbalance problem10.3390/app10041276 ↗
64. Xgboost: A scalable tree boosting system
65. Composition based crystal materials symmetry prediction using machine learning with enhanced descriptors10.1016/j.commatsci.2021.110686 ↗
66. Crystal structure guided machine learning for the discovery and design of intrinsically hard materials
67. Resampling techniques for materials informatics: limitations in crystal point groups classification10.1021/acs.jcim.2c00666 ↗
68. Molecular single-bond covalent radii for elements 1–11810.1002/chem.200800987 ↗
69. Effect of valence electron concentration on stability of fcc or bcc phase in high entropy alloys10.1063/1.3587228 ↗
70. Atomic-size effect and solid solubility of multicomponent alloys10.1016/j.scriptamat.2014.09.010 ↗