journal article·2026-06-25

Chemistry-Informed Machine Learning Framework for Predicting Structural Properties in Osmabenzene Complexes

Linchao Zhu, Xujie Qin, Jun Chen, Tianmin Wu, Lu Zhang, Zhe-Ning Chen

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Abstract

Metallabenzenes, as representative metalla-aromatic compounds, display a pronounced out-of-plane distortion of the metal center relative to the C5 ring. This deviation from planarity, which contrasts with classical criteria for aromaticity, has been shown to enhance aromatic character and is governed by a σ-orbital antibonding interaction, known as the σ-control mechanism. In this study, we investigate the structural properties of osmabenzene complexes using a chemistry-informed machine-learning approach. A data set of 329 osmabenzene structures was compiled, and mechanistically guided descriptors capturing electronic and steric effects were derived from coordination chemistry and molecular orbital theory. Models incorporating orbital energy descriptors achieved high predictive accuracy and quantitatively confirmed the relevance of the σ-control mechanism. To improve computational efficiency, we further developed a chemically interpretable set of ligand-level descriptors that preserved high model performance ( R 2 = 0.970, RMSE = 1.990°, and MAE = 1.544°) without requiring explicit orbital-level calculations. Shapley additive explanation (SHAP) analysis further identified axial ionization potential and equatorial polarizability as the dominant factors controlling nonplanarity. These findings demonstrate the effectiveness of integrating mechanistic chemical understanding into data-driven modeling and provide a practical framework for predicting and rationally designing functional metalla-aromatic materials.
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Research context

OpenAlex topics: Synthesis and Properties of Aromatic Compounds · Machine Learning in Materials Science · Crystallography and molecular interactions

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter

Chinese Academy of Sciences

University of Chinese Academy of Sciences

Fujian College

Fujian Provincial Key Laboratory of Theoretical and Computational Chemistry

College of Photonic and Electronic Engineering

Fujian Normal University

Funding

National Key Research and Development Program of China · Natural Science Foundation of Fujian Province · National Natural Science Foundation of China · Chinese Academy of Sciences

References (74)

Show source-provided references
1. Thorn D. L. · Nouv. J. Chim. · 1979 · 3 · 39
2. 10.1039/C3982000081110.1039/C39820000811 ↗
3. 10.1021/ja047125e10.1021/ja047125e ↗
4. 10.1039/C5CS00004A10.1039/C5CS00004A ↗
5. 10.1021/acs.chemrev.0c0039210.1021/acs.chemrev.0c00392 ↗
6. 10.1021/ar020151210.1021/ar0201512 ↗
7. 10.1016/j.ccr.2006.11.01810.1016/j.ccr.2006.11.018 ↗
8. 10.1016/j.ccr.2013.01.01410.1016/j.ccr.2013.01.014 ↗
9. 10.1021/om400716v10.1021/om400716v ↗
10. 10.1016/j.ccr.2004.08.00410.1016/j.ccr.2004.08.004 ↗
11. 10.1021/acs.accounts.7b0036710.1021/acs.accounts.7b00367 ↗
12. 10.1039/C7SC04454B10.1039/C7SC04454B ↗
13. 10.1021/ar700071p10.1021/ar700071p ↗
14. 10.1016/j.ccr.2014.01.01910.1016/j.ccr.2014.01.019 ↗
15. 10.1002/chem.20170488810.1002/chem.201704888 ↗
16. 10.1002/cjoc.20170061310.1002/cjoc.201700613 ↗
17. 10.1021/acs.accounts.8b0017510.1021/acs.accounts.8b00175 ↗
18. 10.1038/s41586-025-08841-210.1038/s41586-025-08841-2 ↗
19. 10.1039/D5NR05504K10.1039/D5NR05504K ↗
20. 10.1021/acs.accounts.2c0075010.1021/acs.accounts.2c00750 ↗
21. 10.6023/cjoc20190104810.6023/cjoc201901048 ↗
22. 10.1002/asia.20230086010.1002/asia.202300860 ↗
23. 10.1021/acs.jmedchem.5c0069010.1021/acs.jmedchem.5c00690 ↗
24. 10.1002/cjoc.20230047610.1002/cjoc.202300476 ↗
25. 10.1039/D4QI01833H10.1039/D4QI01833H ↗
26. 10.1002/cjoc.20240040910.1002/cjoc.202400409 ↗
27. 10.1002/cjoc.7041210.1002/cjoc.70412 ↗
28. 10.1002/cjoc.7053710.1002/cjoc.70537 ↗
29. 10.1021/cr990363l10.1021/cr990363l ↗
30. 10.1002/cphc.20040006110.1002/cphc.200400061 ↗
31. 10.1021/cr400252h10.1021/cr400252h ↗
32. 10.1021/cr990337n10.1021/cr990337n ↗
33. 10.1002/chem.20060167410.1002/chem.200601674 ↗
34. 10.1021/om070136710.1021/om0701367 ↗
35. 10.1021/acs.inorgchem.8b0121310.1021/acs.inorgchem.8b01213 ↗
36. 10.1016/j.cclet.2024.10977010.1016/j.cclet.2024.109770 ↗
37. 10.1021/acs.jpca.0c0533210.1021/acs.jpca.0c05332 ↗
38. 10.1021/acs.organomet.3c0028010.1021/acs.organomet.3c00280 ↗
39. 10.1103/PhysRevB.89.09410410.1103/PhysRevB.89.094104 ↗
40. 10.1021/accountsmr.1c0024410.1021/accountsmr.1c00244 ↗
41. 10.1038/s41467-023-39405-510.1038/s41467-023-39405-5 ↗
42. 10.1038/s41524-023-01000-z10.1038/s41524-023-01000-z ↗
43. 10.1038/s41467-024-49686-z10.1038/s41467-024-49686-z ↗
44. 10.1063/5.026526510.1063/5.0265265 ↗
45. 10.1039/D5CP00373C10.1039/D5CP00373C ↗
46. 10.1021/ic010525810.1021/ic0105258 ↗
47. 10.1002/qsar.1985004030310.1002/qsar.19850040303 ↗
48. 10.1021/acs.organomet.6b0037110.1021/acs.organomet.6b00371 ↗
49. 10.1063/5.027630610.1063/5.0276306 ↗
50. Chithrananda, S.; Grand, G.; Ramsundar, B. ChemBERTa: Large-scale self-supervised pretraining for molecular property prediction. arXiv Preprint , 2020. arXiv:2010.09885. https://arxiv.org/abs/2010.09885.
51. 10.1002/anie.20050435810.1002/anie.200504358 ↗
52. 10.1039/b517928a10.1039/b517928a ↗
53. Christy, T. M. Synthesis and reaction chemistry of metallabenzenes. Ph.D. Dissertation, The University of Auckland, Auckland, New Zealand, 2020.
54. 10.31635/ccschem.020.20200063510.31635/ccschem.020.202000635 ↗
55. 10.1021/jacs.0c0154910.1021/jacs.0c01549 ↗
56. 10.1073/pnas.171304711510.1073/pnas.1713047115 ↗
57. 10.1021/jacsau.1c0001110.1021/jacsau.1c00011 ↗
58. 10.1073/pnas.090109310610.1073/pnas.0901093106 ↗
59. 10.1103/PhysRevA.38.309810.1103/PhysRevA.38.3098 ↗
60. 10.1103/PhysRevB.37.78510.1103/PhysRevB.37.785 ↗
61. 10.1063/1.43895510.1063/1.438955 ↗
62. 10.1063/1.45506410.1063/1.455064 ↗
63. 10.1063/1.46684710.1063/1.466847 ↗
64. 10.1063/1.133786410.1063/1.1337864 ↗
65. Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Scalmani, G.; Barone, V.; Petersson, G. A.; Nakatsuji, H.; Li, X.; Caricato, M.; Marenich, A. V.; Bloino, J.; Janesko, B. G.; Gomperts, R.; Mennucci, B.; Hratchian, H. P.; Ortiz, J. V.; Izmaylov, A. F.; Sonnenberg, J. L.; Williams; Ding, F.; Lipparini, F.; Egidi, F.; Goings, J.; Peng, B.; Petrone, A.; Henderson, T.; Ranasinghe, D.; Zakrzewski, V. G.; Gao, J.; Rega, N.; Zheng, G.; Liang, W.; Hada, M.; Ehara, M.; Toyota, K.; Fukuda, R.; Hasegawa, J.; Ishida, M.; Nakajima, T.; Honda, Y.; Kitao, O.; Nakai, H.; Vreven, T.; Throssell, K.; Montgomery, J. A., Jr.; Peralta, J. E.; Ogliaro, F.; Bearpark, M. J.; Heyd, J. J.; Brothers, E. N.; Kudin, K. N.; Staroverov, V. N.; Keith, T. A.; Kobayashi, R.; Normand, J.; Raghavachari, K.; Rendell, A. P.; Burant, J. C.; Iyengar, S. S.; Tomasi, J.; Cossi, M.; Millam, J. M.; Klene, M.; Adamo, C.; Cammi, R.; Ochterski, J. W.; Martin, R. L.; Morokuma, K.; Farkas, O.; Foresman, J. B.; Fox, D. J. Gaussian 16 , Rev. A.03; Gaussian: Wallingford, CT, 2016.
66. 10.1039/C7SC01247K10.1039/C7SC01247K ↗
67. 10.1021/jp048266610.1021/jp0482666 ↗
68. 10.1021/jp060761+10.1021/jp060761+ ↗
69. 10.1016/j.carbon.2020.09.04810.1016/j.carbon.2020.09.048 ↗
70. 10.1007/s00214-002-0356-810.1007/s00214-002-0356-8 ↗
71. 10.1002/jcc.2288510.1002/jcc.22885 ↗
72. 10.1063/5.021627210.1063/5.0216272 ↗
73. Pedregosa F. · J. Mach. Learn. Res. · 2011 · 12 · 2825
74. Akiba, T.; Sano, S.; Yanase, T.; Ohta, T.; Koyama, M. Optuna: A next-generation hyperparameter optimization framework. In KDD ‘19: Proceedings of the 25th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining , 2019, 2623–2631. 10.1145/3292500.3330701.10.1145/3292500.3330701 ↗