journal article·2021-09-09Open access

From Enhanced Sampling to Reaction Profiles

Enrico Trizio, Michele Parrinello

Abstract

The determination of efficient collective variables is crucial to the success of many enhanced sampling methods. As inspired by previous discrimination approaches, we first collect a set of data from the different metastable basins. The data are then projected with the help of a neural network into a low-dimensional manifold in which data from different basins are well-discriminated. This is here guaranteed by imposing that the projected data follows a preassigned distribution. The collective variables thus obtained lead to an efficient sampling and often allow reducing the number of collective variables in a multibasin scenario. We first check the validity of the method in two-state systems. We then move to multistep chemical processes. In the latter case, at variance with previous approaches, one single collective variable suffices, leading not only to computational efficiency but also to a very clear representation of the reaction free-energy profile.
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Research context

OpenAlex topics: Spectroscopy and Quantum Chemical Studies · Machine Learning in Materials Science · Theoretical and Computational Physics

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Atomistic Simulations, Istituto Italiano di Tecnologia, 16163 Genova, Italy

Department of Materials Science, Università di Milano-Bicocca, 20126 Milano, Italy

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