journal article·2025-08-21

Is Tl+ an Analogue of K+? IR Spectroscopy of Tl+ and a Key Peptide of the Selectivity Filter in K+ Channels

Satoru Tanabe, Keisuke Hirata, Koichi Tsukiyama, James M. Lisy, Masaaki Fujii, Shun-ichi Ishiuchi

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Abstract

Elemental substitution of K + with Tl + is a powerful method for enhancing the structural analysis of biomolecules because of significant enhancement of sensitivity. Its validity has been explained by their similar physical properties; however, the chemical analogy between K + and Tl + is still under debate. This is of prime importance in K + channels because of the controversy on the translocation mechanism of K + provoked by single-crystal X-ray diffraction using Tl + as a replacement. Here, we have applied cryogenic ion trap infrared laser spectroscopy to a key part of the K + channel to address the question of chemical similarity between Tl + and K + where the conformational distribution of the ion–peptide complexes correlates with ion permeability. The conformations of Tl + with a partial peptide of the K + channel selectivity filter were revealed by combining vibrational spectroscopy and quantum chemical calculations. Upon K + → Tl + substitution, there is a change in the conformer population distributions, significantly different from permeable K +, but very close to that of impermeable Na + . This suggests that substantial differences may exist for the interactions of Tl + and K + in the K + channel selectivity filter. This difference is rationalized by the changes in the ion–peptide interaction, as directly revealed from the vibrational spectra. The fundamental differences between Tl + and the peptide indicate that the chemical behavior of Tl + does not necessarily replicate that of K +, highlighting the need for caution in utilizing elemental substitution of K + by Tl + in spectroscopic and crystallographic analyses.
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Research context

OpenAlex topics: Ion channel regulation and function · Nicotinic Acetylcholine Receptors Study · Neuroscience and Neuropharmacology Research

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Department of Chemistry, School of Science, Institute of Science Tokyo, 2-12-1 Ookayama, Meguro-ku, Tokyo 152-8550, Japan

Department of Chemistry, School of Science, Tokyo University of Science, 1-3 Kagurazaka, Shinjuku-ku, Tokyo 162-8601, Japan

International Research Frontiers Initiative (IRFI), Institute of Integrative Research, Institute of Science Tokyo, 4259 Nagatsuta-cho, Midori-ku, Yokohama 226-8503, Japan

Department of Chemistry

University of Illinois at Urbana−Champaign

Research and Development Initiative, Chuo University, 1-13-27 Kasuga, Bunkyo-ku, Tokyo 112-8551, Japan

Laboratory for Chemistry and Life Science, Institute of Integrative Research, Institute of Science Tokyo, 4259 Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa 226-8503, Japan

Funding

Japan Society for the Promotion of Science · Support for Pioneering Research Initiated by the Next Generation · World Research Hub Initiative of Institute of Science Tokyo · Research Center for Computational Science

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