journal article·2025-04Open access

Amorphous structures and statistical sampling in first-principles molecular dynamics: The prototypical case of glassy GeSe3

Evelyne Martin, Carlo Massobrio

Abstract

The atomic structure of glassy GeSe 3 is obtained via first-principles molecular dynamics (FPMD) calculations by employing a simulation cell of 480 atoms. We complement and improve results previously published (Ref. Micoulaut et al., (2013)) on a smaller system (120 atoms) characterized by a marked disagreement with neutron scattering experiments on the occurrence of Ge − Ge homonuclear bonds. The present calculations show that a finite number of Ge − Ge bonds may occur on specific trajectories depending on the initial conditions selected for the quench from the liquid state. This conclusion is substantiated by the observation that the first trajectory we produced resulted in a negligible number of such homonuclear bonds, while the second did feature some of them. In terms of tetrahedral connections (either edge-sharing or corner-sharing) FPMD results appear to overestimate the edge-sharing ones, the extent of the disagreement depending on the reference experimental probe employed for the comparison (neutron scattering or NMR). • The occurrence of homonuclear Ge–Ge bonds is a contentious feature of glassy GeSe 3 . • In regard to this feature, new molecular dynamics data agree with experiments. • A system of unprecedented size (480 atoms) and two distinct trajectories are employed. • The impact of the initial configuration in the liquid state is found to be crucial.
Source: openalex_inverted_index · Quality: baseline

Research context

OpenAlex topics: Phase-change materials and chalcogenides · Glass properties and applications · Nonlinear Optical Materials Studies

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

References (27)

Show source-provided references
1. Defects in a disordered world: The structure of glassy GeSe210.1103/PhysRevLett.84.2413 ↗
2. Short and intermediate range order in amorphous GeSe210.1103/PhysRevB.77.144207 ↗
3. Ab initio molecular-dynamics study of the structural, vibrational, and electronic properties of glassy GeSe210.1103/PhysRevB.54.12162 ↗
4. Realistic models of binary glasses from models of tetrahedral amorphous semiconductors10.1103/PhysRevB.68.165208 ↗
5. Structure, topology, rings, and vibrational and electronic properties of GexSe1−x glasses across the rigidity transition: A numerical study10.1103/PhysRevB.88.054203 ↗
6. Network connectivity and extended se chains in the atomic structure of glassy GeSe410.1016/j.cplett.2012.07.077 ↗
7. Atomic structure of the two intermediate phase glasses SiSe4 and GeSe410.1103/PhysRevB.79.174201 ↗
8. Structure of the intermediate phase glasses GeSe3 and GeSe4: The deployment of neutron diffraction with isotope substitution10.3389/fmats.2019.00133 ↗
9. Structural properties of Ge-S amorphous networks in relationship with rigidity transitions: An ab initio molecular dynamics study10.1103/PhysRevB.96.094205 ↗
10. Density-functional exchange-energy approximation with correct asymptotic behavior10.1103/PhysRevA.38.3098 ↗
11. Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density10.1103/PhysRevB.37.785 ↗
12. Improved modeling of liquid GeSe2: Impact of the exchange-correlation functional10.1103/PhysRevB.79.214205 ↗
13. Massobrio · 2022
14. Accurate and simple analytic representation of the electron-gas correlation energy10.1103/PhysRevB.45.13244 ↗
15. Unified approach for molecular dynamics and density-functional theory10.1103/PhysRevLett.55.2471 ↗
16. Marx · 2009
17. Efficient pseudopotentials for plane-wave calculations10.1103/PhysRevB.43.1993 ↗
18. A unified formulation of the constant temperature molecular dynamics methods10.1063/1.447334 ↗
19. Canonical dynamics: Equilibrium phase-space distributions10.1103/PhysRevA.31.1695 ↗
20. Adiabaticity in first-principles molecular dynamics10.1103/PhysRevB.45.9413 ↗
21. A theory of the electrical properties of liquid metals10.1080/14786436508211931 ↗
22. Waseda · 1980
23. Structural aspects of the electrical resistivity of binary alloys10.1103/PhysRevB.2.3004 ↗
24. The structure of molten and glassy 2:1 binary systems: an approach using the Bhatia—Thornton formalism10.1098/rspa.1992.0081 ↗
25. Structure of covalently bonded glass-forming melts: A full partial-structure-factor analysis of liquid GeSe210.1103/PhysRevLett.67.97 ↗
26. Structure, connectivity, and configurational entropy of GexSe100−x glasses: Results from 77Se MAS NMR spectroscopy10.1021/jp1014143 ↗
27. Neural network quantum molecular dynamics, intermediate range order in gese2, and neutron scattering experiments10.1021/acs.jpclett.1c01272 ↗