journal article·2020-12

Magnetic separation of nucleic acids from various biological samples using silica-coated iron oxide nanobeads

Huan Yue, Jae Moon Shin, Tirusew Tegafaw, Hyung Soo Han, Kwon-Seok Chae, Yongmin Chang, Gang Ho Lee

Journal of Nanoparticle Research· Volume 22· Issue 12
Publisher page

Abstract

Magnetic nanobeads can be applied to the magnetic separation of nucleic acids which can be used for diagnosing infectious and genetic diseases of patients. In this study, core-shell structured silica-coated iron oxide (Fe3O4@SiO2) nanobeads with a core size distribution of 40–50 nm and a shell thickness of ∼ 10 nm were synthesized and applied to the magnetic separation of nucleic acids from various biological samples such as cancer cells, viruses, and bacteria. The iron oxide core provided strong superparamagnetic properties with a high saturation magnetization suitable for magnetic separation, and the silica shell provided binding surfaces for nucleic acids. The Fe3O4@SiO2 nanobeads showed the successful magnetic separation performance for all samples.
Source: openaire · Quality: candidate unverified · Source record ↗

Research context

OpenAlex topics: Advanced biosensing and bioanalysis techniques · Biosensors and Analytical Detection · Characterization and Applications of Magnetic Nanoparticles

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

References (49)

Show source-provided references
1. Ali N, Rampazzo RCP, Costa ADT, Krieger MA (2017) Current nucleic acid extraction methods and their implications to point-of-care diagnostics. Biomed Res Int 2017:9306564
2. Berensmeier S (2006) Magnetic particles for the separation and purification of nucleic acids. Appl Microbiol Biotechnol 73:495–50410.1007/s00253-006-0675-0 ↗
3. Bora U, Sett A, Singh D (2013) Nucleic acid-based biosensors for clinical applications. Biosens J 2:10410.4172/2090-4967.1000104 ↗
4. Carr SM, Griffith OM (1987) Rapid isolation of animal mitochondrial DNA in a small fixed-angle rotor at ultrahigh speed. Biochem Genet 25:385–39010.1007/BF00554547 ↗
5. Chandrasekar N, Kumar KMM, Balasubramnian KS, Karunamurthy K, Varadharajan R (2013) Facile synthesis of iron oxide, iron-cobalt and zero valent iron nanoparticles and evaluation of their anti-microbial activity, free radicle scavenging activity and antioxidant assay. Dig J Nanomater Biostruct 8:765–775
6. Dahm R (2005) Friedrich Miescher and the discovery of DNA. Dev Biol 278:274–28810.1016/j.ydbio.2004.11.028 ↗
7. Davies MJ, Taylor JI, Sachsinger N, Bruce IJ (1998) Isolation of plasmid DNA using magnetite as a solid-phase adsorbent. Anal Biochem 262:92–9410.1006/abio.1998.2743 ↗
8. Du Y, Dong S (2017) Nucleic acid biosensors: recent advances and perspectives. Anal Chem 89:189–21510.1021/acs.analchem.6b04190 ↗
9. Esser K-H, Marx WH, Lisowsky T (2006) MaxXbond: first regeneration system for DNA binding silica matrices. Nat Methods 3:1–210.1038/nmeth0106-1 ↗
10. Fu Z, Lu Y-C, Lai JJ (2019) Recent advances in biosensors for nucleic acid and exosome detection. Chonnam Med J 55:86–9810.4068/cmj.2019.55.2.86 ↗
11. Gai L, Li Z, Hou Y, Jiang H, Han X, Ma W (2010) Preparation of core-shell Fe3O4/SiO2 microspheres as adsorbents for purification of DNA. J Phys D Appl Phys 43:445001 (8 pp)10.1088/0022-3727/43/44/445001 ↗
12. He H, Li R, Chen Y, Pan P, Tong W, Dong X, Chen Y, Yu D (2017) Integrated DNA and RNA extraction using magnetic beads from viral pathogens causing acute respiratory infections. Sci Rep 7:4519910.1038/srep45199 ↗
13. Huss VAR, Festl H, Schleifer KH (1983) Studies on the spectrophotometric determination of DN a hybridization from Renaturation rates. Syst Appl Microbiol 4:184–19210.1016/S0723-2020(83)80048-4 ↗
14. Iida H, Takayanagi K, Nakanishi T, Osaka T (2007) Synthesis of Fe3O4 nanoparticles with various sizes and magnetic properties by controlled hydrolysis. J Colloid Interface Sci 314:274–28010.1016/j.jcis.2007.05.047 ↗
15. Jordan A, Wust P, Fähling H, John W, Hinz A, Felix R (1993) Inductive heating of ferrimagnetic particles and magnetic fluids: physical evaluation of their potential for hyperthermia. Int J Hyperth 9:51–6810.3109/02656739309061478 ↗
16. Jung CW, Jacobs P (1995) Physical and chemical properties of superparamagnetic iron oxide MR contrast agents: ferumoxides, ferumoxtran, ferumoxsil. Magn Reson Imaging 13:661–67410.1016/0730-725X(95)00024-B ↗
17. Kim J, Lawler DF (2005) Characteristics of zeta potential distribution in silica particles. Bull Kor Chem Soc 26:1083–108910.5012/bkcs.2005.26.7.1083 ↗
18. Kim I-Y, Joachim E, Choi H, Kim K (2015) Toxicity of silica nanoparticles depends on size, dose, and cell type. Nanomedicine: NBM 11:1407–141610.1016/j.nano.2015.03.004 ↗
19. Kovačević N (2016) Magnetic beads based nucleic acid purification for molecular biology applications. In: Mićić M (ed) Sample preparation techniques for soil, plant, and animal samples. Springer, New York, pp 53–6710.1007/978-1-4939-3185-9_5 ↗
20. Ma C, Li C, He N, Wang F, Ma N, Zhang L, Lu Z, Ali Z, Xi Z, Li X, Liang G, Liu H, Deng Y, Xu L, Wang Z (2012) Preparation and characterization of monodisperse core-shell Fe3O4@SiO2 microspheres and its application for magnetic separation of nucleic acids from E. coli BL21. J Biomed Nanotechnol 8:1000–100510.1166/jbn.2012.1454 ↗
21. Mahmoudi M, Laurent S, Shokrgozar MA, Hosseinkhani M (2011) Toxicity evaluation of superparamagnetic iron oxide nanoparticles: cell “vision” versus physicochemical properties of nanoparticles. ACS Nano 5:7263–727610.1021/nn2021088 ↗
22. Malvindi MA, De Matteis V, Galeone A, Brunetti V, Anyfantis GC, Athanassiou A, Cingolani R, Pompa PP (2014) Toxicity assessment of silica coated iron oxide nanoparticles and biocompatibility improvement by surface engineering. PLoS One 9:e85835 (11pp)10.1371/journal.pone.0085835 ↗
23. Meissner J, Prause A, Bharti B, Findenegg GH (2015) Characterization of protein adsorption onto silica nanoparticles: influence of pH and ionic strength. Colloid Polym Sci 293:3381–339110.1007/s00396-015-3754-x ↗
24. Melzak KA, Sherwood CS, Turner RFB, Haynes CA (1996) Driving forces for DNA adsorption to silica in perchlorate solutions. J Colloid Interface Sci 181:635–64410.1006/jcis.1996.0421 ↗
25. Min JH, Woo M-K, Yoon HY, Jang JW, Wu JH, Lim C-S, Kim YK (2014) Isolation of DNA using magnetic nanoparticles coated with dimercaptosuccinic acid. Anal Biochem 447:114–11810.1016/j.ab.2013.11.018 ↗
26. Mohapatra J, Zeng F, Elkins K, Xing M, Ghimire M, Yoon S, Mishra SR, Liu JP (2018) Size-dependent magnetic and inductive heating properties of Fe3O4 nanoparticles: scaling laws across the superparamagnetic size. Phys Chem Chem Phys 20:12879–1288710.1039/C7CP08631H ↗
27. Musić S, Filipović-Vinceković N, Sekovanić L (2011) Precipitation of amorphous SiO2 particles and their properties. Braz J Chem Eng 28:89–9410.1590/S0104-66322011000100011 ↗
28. Niemirowicz K, Wilczewska AZ, Car H (2013) Magnetic nanoparticles as separators of nucleic acids. Chemik 67:836–841
29. Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, Amino N, Hase T (2000) Loop-mediated isothermal amplification of DNA. Nucleic Acids Res 28:e6310.1093/nar/28.12.e63 ↗
30. Olsvik Ø, Popovic T, Skjerve E, Cudjoe KO, Hornes E, Ugelstad J, Uhlén M (1994) Magnetic separation techniques in diagnostic microbiology. Clin Microbiol Rev 7:43–5410.1128/CMR.7.1.43 ↗
31. Pankhurst QA, Thanh NKT, Jones SK, Dobson J (2009) Progress in applications of magnetic nanoparticles in biomedicine. J Phys D Appl Phys 42:22400110.1088/0022-3727/42/22/224001 ↗
32. Posch A (2014) Sample preparation guidelines for two-dimensional electrophoresis. Arch Physiol Biochem 120:192–19710.3109/13813455.2014.955031 ↗
33. Qiang Y, Antony J, Sharma A, Nutting J, Sikes D, Meyer D (2006) Iron/iron oxide core-shell nanoclusters for biomedical applications. J Nanopart Res 8:489–49610.1007/s11051-005-9011-3 ↗
34. Reimer P, Balzer T (2003) Ferucarbotran (Resovist): a new clinically approved RES-specific contrast agent for contrast-enhanced MRI of the liver: properties, clinical development, and applications. Eur Radiol 13:1266–127610.1007/s00330-002-1721-7 ↗
35. Reischl U, Linde H-J, Metz M, Leppmeier B, Lehn N (2000) Rapid identification of methicillin-resistant Staphylococcus aureus and simultaneous species confirmation using real-time fluorescence PCR. J Clin Microbiol 38:2429–243310.1128/JCM.38.6.2429-2433.2000 ↗
36. Reuter C, Slesiona N, Hentschel S, Aehlig O, Breitenstein A, Csáki A, Henkel T, Fritzsche W (2020) Loop-mediated amplification as promising on-site detection approach for Legionella pneumophila and Legionella spp. Appl Microbiol Biotechnol 104:405–41510.1007/s00253-019-10286-3 ↗
37. Rittich B, Španová A (2013) SPE and purification of DNA using magnetic particles. J Sep Sci 36:2472–248510.1002/jssc.201300331 ↗
38. Stöber W, Fink A, Bohn E (1968) Controlled growth of monodisperse silica spheres in the micron size range. J Colloid Interface Sci 26:62–6910.1016/0021-9797(68)90272-5 ↗
39. Tan SC, Yiap BC (2009) DNA, RNA, and protein extraction: the past and the present. J Biomed Biotechnol 2009:57439810.1155/2009/574398 ↗
40. Tegafaw T, Xu W, Lee SH, Chae KS, Chang Y, Lee GH (2017) Production of nearly monodisperse Fe3O4 and Fe@Fe3O4 nanoparticles in aqueous medium and their surface modification for biomedical applications. Int J Mod Phys B 31:175001410.1142/S021797921750014X ↗
41. Terry CF, Harris N, Parkes HC (2002) Detection of genetically modified crops and their derivatives: critical steps in sample preparation and extraction. J AOAC Int 85:768–77410.1093/jaoac/85.3.768 ↗
42. Thermo Scientific (2010) T042-technical bulletin nano drop spectrometers, 260/280 and 260/230 ratios. Wilmington, USA
43. Thiesen B, Jordan A (2008) Clinical applications of magnetic nanoparticles for hyperthermia. Int J Hyperth 24:467–47410.1080/02656730802104757 ↗
44. Uhlen M (1989) Magnetic separation of DNA. Nature 340:733–73410.1038/340733a0 ↗
45. Wang Y-XJ (2011) Superparamagnetic iron oxide based MRI contrast agents: current status of clinical application. Quant Imaging Med Surg 1:35–40
46. Wang J, Zheng S, Shao Y, Liu J, Xu Z, Zhu D (2010) Amino-functionalized Fe3O4@SiO2 core-shell magnetic nanomaterial as a novel adsorbent for aqueous heavy metals removal. J Colloid Interface Sci 349:293–29910.1016/j.jcis.2010.05.010 ↗
47. Wink M (2006) An introduction to molecular biotechnology: molecular fundamentals, methods and application in modern biotechnology, 2nd edn. Wiley-VCH, Weinheim
48. Yoza B, Matsumoto M, Matsunaga T (2002) DNA extraction using modified bacterial magnetic particles in the presence of amino silane compound. J Biotechnol 94:217–22410.1016/S0168-1656(01)00427-8 ↗
49. Zou J, Peng YG, Tang YY (2014) A facile bi-phase synthesis of Fe3O4@SiO2 core-shell nanoparticles with tunable film thickness. RSC Adv 4:9693–970010.1039/c3ra47043a ↗