Tools for the quantification of the dynamic assembly of colloidal chains of ellipsoidal particles
Source abstract
Abstract
The assemblies of colloidal particles and their characterization are becoming more complex as new particle shapes, materials, and assembly methods are being introduced. Consequentially, there is a need for tools that can analyze videos and extract quantitative data from qualitative media to elucidate the dynamic processes of assembly formations. This contribution presents an algorithm that analyzes videos of the 2D assembly process of ellipsoidal particles. Particles are both classified using abstracted interparticle properties and tracked over time. Our algorithm is customized to quantiatively analyze the dynamic assembly of the ellipsoidal colloidal particles into chains, which break and reform over time. By analyzing the yielded data from our algorithm, we better elucidate the dynamic nature of particle chain formation. We foresee our algorithm being capable of analyzing videos in real time to study the dynamic assembly behavior of diverse matter such as biological samples and nanoparticles of various shapes.
Source: openalex_inverted_index · Quality: baseline
Research context
OpenAlex topics: Pickering emulsions and particle stabilization · Archaeology and Rock Art Studies · Material Dynamics and Properties
SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.
References (100+)
Show source-provided references
1. Self-assembly of colloidal nanocrystals: from intricate structures to functional materials10.1021/acs.chemrev.6b00196 ↗
2. Unconventional-phase crystalline materials constructed from multiscale building blocks10.1021/acs.chemrev.0c01047 ↗
3. Integration of colloidal nanocrystals into lithographically patterned devices10.1021/nl049488i ↗
4. Nanoscale topographical control of capillary assembly of nanoparticles10.1038/nnano.2016.179 ↗
5. Controlled particle placement through convective and capillary assembly10.1021/la700852c ↗
6. Hybrid colloidal microswimmers through sequential capillary assembly10.1039/C7SM00443E ↗
7. Assembly and dynamic analysis of square colloidal crystals via templated capillary assembly10.1021/acs.langmuir.9b02124 ↗
8. Top-down heterogeneous colloidal engineering using capillary assembly of liquid particles10.1021/acsnano.0c09246 ↗
9. Assembly of colloidal semiconductor Nanorods in solution by depletion attraction10.1021/nl903946n ↗
10. Tunable assembly of hybrid colloids induced by regioselective depletion10.1038/s41563-020-0744-2 ↗
11. Directing colloidal self-assembly through roughness-controlled depletion attractions10.1103/PhysRevLett.99.268301 ↗
12. Engineering DNA-mediated colloidal crystallization10.1021/la0528955 ↗
13. Assembling colloidal clusters using crystalline templates and reprogrammable DNA interactions10.1039/c3sm50950h ↗
14. A DNA-based method for rationally assembling nanoparticles into macroscopic materials10.1038/382607a0 ↗
15. DNA-guided crystallization of colloidal nanoparticles10.1038/nature06560 ↗
16. Programming colloidal phase transitions with DNA strand displacement10.1126/science.1259762 ↗
17. Interactions of highly charged colloidal cylinders with applications to double-stranded DNA10.1002/bip.1977.360160705 ↗
18. Colloids with valence and specific directional bonding10.1038/nature11564 ↗
19. DNA-programmable nanoparticle crystallization10.1038/nature06508 ↗
20. Exploring the zone of anisotropy and broken symmetries in DNA-mediated nanoparticle crystallization10.1073/pnas.1611808113 ↗
21. Anisotropic nanoparticle complementarity in DNA-mediated co-crystallization10.1038/nmat4293 ↗
22. The emergence of valency in colloidal crystals through electron equivalents10.1038/s41563-021-01170-5 ↗
23. Assembly of shape-tunable colloidal dimers in a Dielectrophoretic field10.1021/acs.chemmater.0c01947 ↗
24. Electric field mediated assembly of three dimensional equilibrium colloidal crystals10.1039/C1SM06414B ↗
25. Assembly of ordered colloidal aggregrates by electric-field-induced fluid flow10.1038/386057a0 ↗
26. Janus colloidal matchsticks10.1021/ja305067g ↗
27. Machine learning to reveal nanoparticle dynamics from liquid-phase TEM videos10.1021/acscentsci.0c00430 ↗
28. Colloidal matter: packing, geometry, and entropy10.1126/science.1253751 ↗
29. Shape-anisotropic colloids: building blocks for complex assemblies10.1016/j.cocis.2011.01.003 ↗
30. Cubic crystals from cubic colloids10.1039/C0SM01246G ↗
31. Magnetic click colloidal assembly10.1021/ja301344n ↗
32. Uniform nonspherical colloidal particles with tunable shapes10.1002/adma.200602345 ↗
33. Self-assembly of colloids with liquid protrusions10.1021/ja8079803 ↗
34. Total synthesis of colloidal matter10.1038/s41578-021-00323-x ↗
35. Fluorescent monodisperse silica ellipsoids for optical rotational diffusion studies10.1021/la052484o ↗
36. Formation of nematic order in 3D systems of hard colloidal ellipsoids10.1039/C9SM01926J ↗
37. Synthesis and assembly of nonspherical hollow silica colloids under confinement10.1039/b812406j ↗
38. Chiral colloidal clusters10.1038/nature07237 ↗
39. Patchy particles made by colloidal fusion10.1038/nature23901 ↗
40. Self-assembly of colloidal cubes via vertical deposition10.1021/la3007052 ↗
41. Video microscopy of colloidal suspensions and colloidal crystals10.1016/S1359-0294(02)00049-3 ↗
42. A data-driven statistical description for the hydrodynamics of active matter10.1088/1367-2630/ac23c4 ↗
43. Blood vessel-on-a-chip examines the biomechanics of microvasculature10.1039/D1SM01312B ↗
44. Integrated computational and experimental pipeline for quantifying local cell-matrix interactions10.1038/s41598-021-95935-2 ↗
45. Accelerated annealing of colloidal crystal monolayers by means of cyclically applied electric fields10.1038/s41598-021-90310-7 ↗
46. Conformations and diffusion of flexibly linked colloidal chains10.1088/2515-7639/abf571 ↗
47. Allan · 2021
48. Optimizing fluorophore density for single virus counting: a photophysical approach10.1088/2050-6120/abd8e4 ↗
49. Characterisation of nanoplastics during the degradation of polystyrene10.1016/j.chemosphere.2015.11.078 ↗
50. Methods of digital video microscopy for colloidal studies10.1006/jcis.1996.0217 ↗
51. Quantification of plasticity via particle dynamics above and below yield in a 2D jammed suspension10.1039/C9SM02482D ↗
52. Active colloidal particles in emulsion droplets: a model system for the cytoplasm
53. Optothermal pulling, trapping, and assembly of colloids using nanowire plasmons10.1039/D1SM01365C ↗
54. Precise particle tracking against a complicated background: polynomial fitting with Gaussian weight10.1088/1478-3975/4/3/008 ↗
55. Robust single-particle tracking in live-cell time-lapse sequences10.1038/nmeth.1237 ↗
56. A novel particle tracking method with individual particle size measurement and its application to ordering in glassy hard sphere colloids10.1039/C2SM27107A ↗
57. Pattern detection in colloidal assembly: a mosaic of analysis techniques10.1016/j.cis.2020.102252 ↗
58. Toolbox for tracking and analyzing crowded mixture of colloidal particles10.1016/j.colcom.2021.100546 ↗
59. UmUTracker: a versatile MATLAB program for automated particle tracking of 2D light microscopy or 3D digital holography data10.1016/j.cpc.2017.05.029 ↗
60. JColloids: image analysis for video-microscopy studies of colloidal suspensions10.1016/j.cpc.2018.04.033 ↗
61. JChainsAnalyser: an ImageJ-based stand-alone application for the study of magneto-rheological fluids10.1016/j.cpc.2009.04.016 ↗
62. Analyzing magnetic nanofluid structure10.1063/5.0077322 ↗
63. A fully-automated image processing technique to improve measurement of suspended particles and flocs by removing out-of-focus objects10.1016/j.cageo.2012.08.018 ↗
64. Nanoscale cinematography of soft matter system under liquid-phase TEM10.1021/accountsmr.0c00013 ↗
65. Nanoplastic sizes and numbers: quantification by single particle tracking
66. Deposition of sticky spheres in channel flow: modeling of surface coverage evolution requires accurate sphere-sphere collision hydrodynamics10.1016/j.jcis.2018.06.097 ↗
67. Local characterization of hindered Brownian motion by using digital video microscopy and 3D particle tracking10.1063/1.4865552 ↗
68. On measuring colloidal volume fractions10.1039/C1SM06083J ↗
69. Quantitative imaging of colloidal flows10.1016/j.cis.2008.09.008 ↗
70. Re-entrant solidification in polymer-colloid mixtures as a consequence of competing entropic and enthalpic attractions10.1038/nmat4109 ↗
71. Structural characterisation of polycrystalline colloidal monolayers in the presence of aspherical impurities10.1088/0953-8984/27/19/194108 ↗
72. Self-assembly of single-sized and binary colloidal particles at air/water interface by surface confinement and water discharge10.1021/acs.langmuir.6b02157 ↗
73. Observations of first-order liquid-to-hexatic and hexatic-to-solid phase transitions in a confined colloid suspension10.1103/PhysRevLett.77.2577 ↗
74. Particle-resolved phase identification in two-dimensional condensable systems10.1021/acs.jpcc.7b09317 ↗
75. Pattern formation in binary colloidal assemblies: hidden symmetries in a kaleidoscope of structures10.1021/acs.langmuir.8b01411 ↗
76. A journey through the landscapes of small particles in binary colloidal assemblies: unveiling structural transitions from isolated particles to clusters upon variation in composition10.3390/nano9070921 ↗
77. Order-to-disorder transition in ring-shaped colloidal stains10.1103/PhysRevLett.107.085502 ↗
78. Characterizing the local primary dendrite arm spacing in directionally solidified dendritic microstructures10.1007/s11661-013-1985-3 ↗
79. Bond-orientational order in liquids and glasses10.1103/PhysRevB.28.784 ↗
80. Local bond order parameters for accurate determination of crystal structures in two and three dimensions10.1039/C8CP05248D ↗
81. Structure determines where crystallization occurs in a soft colloidal glass10.1038/s41567-020-1016-4 ↗
82. Accurate determination of crystal structures based on averaged local bond order parameters10.1063/1.2977970 ↗
83. Disordered, quasicrystalline and crystalline phases of densely packed tetrahedra10.1038/nature08641 ↗
84. Activity-controlled annealing of colloidal monolayers10.1038/s41467-019-11362-y ↗
85. Universal noble metal nanoparticle seeds realized through iterative reductive growth and oxidative dissolution reactions10.1021/ja503509k ↗
86. Detection and tracking of anisotropic core-shell colloids10.1088/1361-648X/aadcbf ↗
87. Quantitative analysis of nanorod aggregation and morphology from scanning electron micrographs using SEMseg10.1021/acs.jpca.0c03190 ↗
88. Determination of the positions and orientations of concentrated rod-like colloids from 3D microscopy data10.1088/0953-8984/27/19/194109 ↗
89. Computationally guided assembly of oriented nanocubes by modulating grafted polymer-surface interactions10.1021/acs.nanolett.5b02748 ↗
90. Direct visualization of colloidal rod assembly by confocal microscopy10.1021/la046908a ↗
91. PEBBLES and PEBBLEJUGGLER: software for accurate, unbiased, and fast measurement and analysis of nanoparticle morphology from transmission electron microscopy (TEM) micrographs10.1039/c2nr31276j ↗
92. Automated tracking of colloidal clusters with sub-pixel accuracy and precision10.1088/1361-648X/29/4/044001 ↗
93. Self-assembly and rheology of ellipsoidal particles at interfaces10.1021/la803554u ↗
94. Quantifying patterns in optical micrographs of one- and two-dimensional ellipsoidal particle assemblies10.1039/D0SM01692F ↗
95. Two-dimensional (2D) or quasi-2D superstructures from DNA-coated colloidal particles10.1002/anie.202014045 ↗
96. CATCH: characterizing and tracking colloids holographically using deep neural networks
97. Machine-learning techniques for fast and accurate feature localization in holograms of colloidal particles10.1364/OE.26.015221 ↗
98. Statistical characterization of the morphologies of nanoparticles through machine learning based electron microscopy image analysis10.1021/acsnano.0c06809 ↗
99. Deep neural network analysis of nanoparticle ordering to identify defects in layered carbon materials10.1039/D0SC05696K ↗
100. Synthetic image rendering solves annotation problem in deep learning nanoparticle segmentation10.1002/smtd.202100223 ↗