journal article·2024-11-26Open access

Liquid Biopsy-Based Detection and Response Prediction for Depression

Seungmin Kim, Youbin Kang, Hyunku Shin, Eun Byul Lee, Byung-Joo Ham, Yeonho Choi

ACS Nano· Volume 18· Issue 47

Abstract

Proactively predicting antidepressant treatment response before medication failures is crucial, as it reduces unsuccessful attempts and facilitates the development of personalized therapeutic strategies, ultimately enhancing treatment efficacy. The current decision-making process, which heavily depends on subjective indicators, underscores the need for an objective, indicator-based approach. This study developed a method for detecting depression and predicting treatment response through deep learning-based spectroscopic analysis of extracellular vesicles (EVs) from plasma. EVs were isolated from the plasma of both nondepressed and depressed groups, followed by Raman signal acquisition, which was used for AI algorithm development. The algorithm successfully distinguished depression patients from healthy individuals and those with panic disorder, achieving an AUC accuracy of 0.95. This demonstrates the model's capability to selectively diagnose depression within a nondepressed group, including those with other mental health disorders. Furthermore, the algorithm identified depression-diagnosed patients likely to respond to antidepressants, classifying responders and nonresponders with an AUC accuracy of 0.91. To establish a diagnostic foundation, the algorithm applied explainable AI (XAI), enabling personalized medicine for companion diagnostics and highlighting its potential for the development of liquid biopsy-based mental disorder diagnosis.
Source: openalex_inverted_index · Quality: baseline

Research context

OpenAlex topics: Cell Image Analysis Techniques · Machine Learning in Healthcare · Metabolomics and Mass Spectrometry Studies

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Department of Biomedical Engineering

Korea University

Interdisciplinary Program in Precision Public Health

Department of Biomedical Sciences

Korea University College of Medicine

Exopert Corporation

School of Bioengineering

Funding

National Research Foundation of Korea · Ministry of SMEs and Startups

References (68)

Show source-provided references
1. 10.1016/S0140-6736(16)31678-610.1016/S0140-6736(16)31678-6 ↗
2. 10.1177/0269881122110405810.1177/02698811221104058 ↗
3. 10.1136/bmj.l79410.1136/bmj.l794 ↗
4. 10.2147/PPA.S2971610.2147/PPA.S29716 ↗
5. 10.1016/S0006-3223(03)00231-210.1016/S0006-3223(03)00231-2 ↗
6. 10.1177/215013272093126110.1177/2150132720931261 ↗
7. 10.1097/JCP.000000000000163810.1097/JCP.0000000000001638 ↗
8. 10.1016/j.jad.2017.11.00410.1016/j.jad.2017.11.004 ↗
9. 10.1192/bjp.2018.12210.1192/bjp.2018.122 ↗
10. 10.1016/j.ajp.2023.10389110.1016/j.ajp.2023.103891 ↗
11. 10.1192/bjo.2023.62710.1192/bjo.2023.627 ↗
12. 10.1016/j.jad.2024.01.14210.1016/j.jad.2024.01.142 ↗
13. 10.1038/s41591-023-02764-z10.1038/s41591-023-02764-z ↗
14. Barbara, A. M.; Xie, W.; Mahood, Q.; Hamson, A.Ketamine for Adults With Treatment-Resistant Depression or Posttraumatic Stress Disorder: A 2023 Update Health Technol. Rev. 2024, 4, Report No.: RC1522.10.51731/cjht.2024.817 ↗
15. 10.3389/fpsyt.2023.129117610.3389/fpsyt.2023.1291176 ↗
16. 10.3389/fpsyt.2013.0005710.3389/fpsyt.2013.00057 ↗
17. 10.2147/NDT.S11454210.2147/NDT.S114542 ↗
18. 10.3390/brainsci1207094010.3390/brainsci12070940 ↗
19. 10.1074/mcp.M112.02280610.1074/mcp.M112.022806 ↗
20. 10.4172/2155-9929.100015710.4172/2155-9929.1000157 ↗
21. 10.1007/978-1-4939-9822-7_2510.1007/978-1-4939-9822-7_25 ↗
22. 10.3390/ijms1709150510.3390/ijms17091505 ↗
23. 10.1038/aps.2017.1210.1038/aps.2017.12 ↗
24. 10.3389/fonc.2019.0093110.3389/fonc.2019.00931 ↗
25. 10.1021/acs.analchem.3c0021510.1021/acs.analchem.3c00215 ↗
26. 10.1038/s41598-018-33682-710.1038/s41598-018-33682-7 ↗
27. 10.1016/j.addr.2015.02.00610.1016/j.addr.2015.02.006 ↗
28. 10.1021/nl300544710.1021/nl3005447 ↗
29. 10.1038/s41598-017-05050-410.1038/s41598-017-05050-4 ↗
30. 10.1117/1.JNP.9.09309410.1117/1.JNP.9.093094 ↗
31. 10.1016/S1369-7021(12)70017-210.1016/S1369-7021(12)70017-2 ↗
32. 10.1002/smll.20120291410.1002/smll.201202914 ↗
33. 10.1016/j.saa.2010.12.07910.1016/j.saa.2010.12.079 ↗
34. 10.1021/acsnano.9b0911910.1021/acsnano.9b09119 ↗
35. 10.1002/advs.20190363810.1002/advs.201903638 ↗
36. 10.1021/acssensors.3c0068110.1021/acssensors.3c00681 ↗
37. 10.1038/s41467-023-37403-110.1038/s41467-023-37403-1 ↗
38. Ribeiro, M. T.; Singh, S.; Guestrin, C.In Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining. 2016, pp 1135–1144.10.1145/2939672.2939778 ↗
39. 10.1109/ACCESS.2018.287005210.1109/ACCESS.2018.2870052 ↗
40. 10.1145/356104810.1145/3561048 ↗
41. 10.1038/s41467-020-17431-x10.1038/s41467-020-17431-x ↗
42. 10.1038/s41746-024-01190-w10.1038/s41746-024-01190-w ↗
43. 10.1021/jasms.3c0040310.1021/jasms.3c00403 ↗
44. 10.1007/s13391-021-00281-010.1007/s13391-021-00281-0 ↗
45. 10.3390/pharmaceutics604065110.3390/pharmaceutics6040651 ↗
46. 10.1007/s00604-022-05247-z10.1007/s00604-022-05247-z ↗
47. 10.1159/00048513010.1159/000485130 ↗
48. 10.1016/j.ab.2004.05.05210.1016/j.ab.2004.05.052 ↗
49. 10.3390/cancers1309217910.3390/cancers13092179 ↗
50. 10.1021/bi010730z10.1021/bi010730z ↗
51. 10.1016/j.jpba.2005.12.01810.1016/j.jpba.2005.12.018 ↗
52. 10.3390/healthcare501000510.3390/healthcare5010005 ↗
53. 10.18773/austprescr.2016.03910.18773/austprescr.2016.039 ↗
54. First M. B. · 2016
55. 10.1111/j.2044-8341.1959.tb00467.x10.1111/j.2044-8341.1959.tb00467.x ↗
56. 10.1136/jnnp.23.1.5610.1136/jnnp.23.1.56 ↗
57. 10.1093/pnasnexus/pgac15610.1093/pnasnexus/pgac156 ↗
58. 10.1038/s41596-020-00466-110.1038/s41596-020-00466-1 ↗
59. 10.1016/j.ymeth.2016.02.01710.1016/j.ymeth.2016.02.017 ↗
60. 10.1093/bib/bbx04410.1093/bib/bbx044 ↗
61. Saad Albawi, T. A. M. In Understanding of a Convolutional Neural Network ; 2017 International Conference on Engineering and Technology (ICET), IEEE, 2017; pp 1–6.10.1109/ICEngTechnol.2017.8308186 ↗
62. 10.1016/j.jad.2019.08.00910.1016/j.jad.2019.08.009 ↗
63. Dai, J.; Zhang, Y.; Hou, J.; Wang, X.; Tan, L.; Jiang, J.Sparse Wavelet Decomposition and Filter Banks with CNN Deep Learning for Speech Recognition. In IEEE International Conference on Electro Information Technology (EIT) ; 2019; pp 098–103.10.1109/EIT.2019.8833972 ↗
64. 10.1016/j.patcog.2017.11.00710.1016/j.patcog.2017.11.007 ↗
65. 10.1038/s41591-020-0842-310.1038/s41591-020-0842-3 ↗
66. 10.1109/TMI.2016.252816210.1109/TMI.2016.2528162 ↗
67. 10.1039/b311214d10.1039/b311214d ↗
68. 10.1109/TPAMI.2020.299220710.1109/TPAMI.2020.2992207 ↗