journal article·2023-05-09

Robust Acute Pancreatitis Identification and Diagnosis: RAPIDx

Qingfu Zhu, Jiaxin Luo, Hui-Ping Li, Wen Ye, Reguang Pan, Ke-Qing Shi, Rui Yang, Hao Xu, Hengrui Li, Luke P. Lee, Fei Liu

ACS Nano· Volume 17· Issue 9
Publisher page

Abstract

The occurrence of acute pancreatitis (AP) is increasing significantly worldwide. However, current diagnostic methods of AP do not provide a clear clinical stratification of severity, and the prediction of complications in AP is still limited. Here, we present a robust AP identification and diagnosis (RAPIDx) method by the proteomic fingerprinting of intact nanoscale extracellular vesicles (EVs) from clinical samples. By tracking analysis of circulating biological nanoparticles released by cells ( i.e., EVs) via bottom-up proteomics, we obtain close phenotype connections between EVs, cell types, and multiple tissues based on their specific proteomes and identify the serum amyloid A (SAA) proteins on EVs as potential biomarkers that are differentially expressed from AP patients significantly. We accomplish the quantitative analysis of EVs fingerprints using MALDI-TOF MS and find the SAA proteins (SAA1-1, desR-SAA1-2, SAA2, SAA1-2) with areas under the curve (AUCs) from 0.92 to 0.97, which allows us to detect AP within 30 min. We further realize that SAA1-1 and SAA2, combined with two protein peaks (5290.19, 14032.33 m / z ), can achieve an AUC of 0.83 for classifying the severity of AP. The RAPIDx platform will facilitate timely diagnosis and treatment of AP before severity development and persistent organ failure and promote precision diagnostics and the early diagnosis of pancreatic cancer.
Source: openalex_inverted_index · Quality: baseline

Research context

OpenAlex topics: Extracellular vesicles in disease · MicroRNA in disease regulation · Dermatological and COVID-19 studies

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

National Engineering Research Center of Ophthalmology and Optometry, Eye Hospital, Wenzhou Medical University, Wenzhou, 325027, China

School of Ophthalmology & Optometry, School of Biomedical Engineering, Wenzhou Medical University, Wenzhou, Zhejiang 325035, China

The First Affiliated Hospital of Wenzhou Medical University, Wenzhou, Zhejiang 325035, China

Harvard Medical School, Department of Medicine, Brigham Women’s Hospital, Boston, Massachusetts 02115, United States

Department of Bioengineering, Department of Electrical Engineering and Computer Science, University of California at Berkeley, Berkeley, California 94720, United States

Department of Biophysics, Institute of Quantum Biophysics, Sungkyunkwan University, Suwon, Gyeonggi-do 16419, Korea

Funding

Wenzhou Medical University · Ministry of Health of the People's Republic of China · National Natural Science Foundation of China · Natural Science Foundation of Zhejiang Province · Wenzhou Basic Research Projects

References (46)

Show source-provided references
1. 10.2147/JIR.S13575110.2147/JIR.S135751 ↗
2. 10.21037/atm.2019.05.3710.21037/atm.2019.05.37 ↗
3. 10.1097/MPA.000000000000050010.1097/MPA.0000000000000500 ↗
4. 10.1053/j.gastro.2018.12.04110.1053/j.gastro.2018.12.041 ↗
5. 10.1001/jama.2020.2031710.1001/jama.2020.20317 ↗
6. 10.1016/j.ijmedinf.2021.10464110.1016/j.ijmedinf.2021.104641 ↗
7. 10.1038/s41568-020-00299-w10.1038/s41568-020-00299-w ↗
8. 10.1038/s41571-020-00433-510.1038/s41571-020-00433-5 ↗
9. 10.1126/science.aau697710.1126/science.aau6977 ↗
10. 10.1016/j.pneurobio.2021.10212410.1016/j.pneurobio.2021.102124 ↗
11. 10.1038/nrm.2017.12510.1038/nrm.2017.125 ↗
12. 10.1038/s41573-022-00410-w10.1038/s41573-022-00410-w ↗
13. 10.1016/j.microc.2021.10681610.1016/j.microc.2021.106816 ↗
14. 10.7150/ijbs.5485810.7150/ijbs.54858 ↗
15. 10.1002/path.477110.1002/path.4771 ↗
16. 10.1111/jcmm.1684410.1111/jcmm.16844 ↗
17. 10.1038/s41598-019-56220-510.1038/s41598-019-56220-5 ↗
18. 10.1161/CIRCRESAHA.117.30941710.1161/CIRCRESAHA.117.309417 ↗
19. 10.1038/s41378-021-00244-310.1038/s41378-021-00244-3 ↗
20. 10.1016/j.bios.2021.11373010.1016/j.bios.2021.113730 ↗
21. 10.1039/D2LC00006G10.1039/D2LC00006G ↗
22. 10.1039/D2LC00206J10.1039/D2LC00206J ↗
23. 10.1038/s41592-020-01034-x10.1038/s41592-020-01034-x ↗
24. 10.1074/mcp.M800108-MCP20010.1074/mcp.M800108-MCP200 ↗
25. 10.1038/nrg123010.1038/nrg1230 ↗
26. 10.1038/nrmicro306810.1038/nrmicro3068 ↗
27. 10.1016/j.chempr.2019.04.00710.1016/j.chempr.2019.04.007 ↗
28. 10.1021/acs.analchem.1c0476210.1021/acs.analchem.1c04762 ↗
29. 10.1039/D1AN01163D10.1039/D1AN01163D ↗
30. 10.1016/j.biosx.2021.10009910.1016/j.biosx.2021.100099 ↗
31. 10.1080/20013078.2018.153575010.1080/20013078.2018.1535750 ↗
32. 10.2147/JIR.S35141610.2147/JIR.S351416 ↗
33. 10.1021/acs.analchem.7b0497510.1021/acs.analchem.7b04975 ↗
34. 10.1016/j.jprot.2012.06.02210.1016/j.jprot.2012.06.022 ↗
35. 10.1503/cjs.01501510.1503/cjs.015015 ↗
36. 10.1038/s12276-019-0218-210.1038/s12276-019-0218-2 ↗
37. 10.1016/j.bios.2023.11508810.1016/j.bios.2023.115088 ↗
38. 10.1002/path.581110.1002/path.5811 ↗
39. 10.3389/fmicb.2015.0079110.3389/fmicb.2015.00791 ↗
40. 10.1007/978-3-030-41769-7_1710.1007/978-3-030-41769-7_17 ↗
41. 10.1016/j.hpb.2017.06.00110.1016/j.hpb.2017.06.001 ↗
42. 10.1016/j.vetimm.2011.02.01910.1016/j.vetimm.2011.02.019 ↗
43. 10.1023/A:102473901778910.1023/A:1024739017789 ↗
44. 10.1097/00000658-198508000-0001610.1097/00000658-198508000-00016 ↗
45. 10.1016/j.intimp.2018.02.01810.1016/j.intimp.2018.02.018 ↗
46. 10.3389/fcimb.2021.75123210.3389/fcimb.2021.751232 ↗