Amine-Catalyzed Biomimetic Hydrolysis and Condensation of Organosilicate
Source abstract
Abstract
Biogenic silica production occurs at mild conditions with greater control of pore size, shape, and micropatterning than is possible with typical industrial sol−gel methods, providing inspiration for potential alternative routes to silica synthesis. Researchers have implicated the amine moieties, histidine and polylysine, on proteins isolated from sponges and diatoms as catalysts for biogenic silica precipitation. Different mechanistic roles have been ascribed to the amines, but few systematic, quantitative studies isolating one effect from another have been conducted. In the present study, we use 29 Si NMR spectroscopy to systematically examine the different possible mechanistic roles of mono- and polyamines in catalyzing silica synthesis at mildly acidic pH (∼5) from an organosilicate starting compound, trimethylethoxysilane (TMES). TMES has a single organosilicate bond, so there are no competing reactions and the reaction progress can be followed with little ambiguity. Hydrolysis and condensation (dimerization) of TMES lead to the products trimethylsilanol (TMSiOH) and hexamethyldisiloxane (HMD). The Refocused Insensitive Nuclei Enhanced by Polarization Transfer pulse sequence (RINEPT+) provides unambiguous, quantitative 29 Si NMR spectra from which the hydrolysis and condensation rates in the presence of each amine can be obtained. For both mono- and polyamines, the catalytic efficiency scales with the concentration of conjugate base form and inversely with p K a . Thus, catalysis is most efficient with more acidic monoamines, such as pyridine and imidazole, as well as for the longer polyamines, where the most acidic protonation constant is lower than the experimental pH (∼5). We postulate a nucleophile-catalyzed hydrolysis mechanism where the conjugate base of the amine attacks Si to form a pentacoordinate intermediate with TMES. Condensation is interpreted as an acid-catalyzed S N 2 mechanism. Our findings potentially explain the evolutionary selection of histidine-containing proteins for biogenic silica synthesis by sponges and address the chemical mechanisms at work for the precipitation of silica by polylysine-containing proteins in diatoms. Along with the physical mechanisms suggested by other research groups, the systematic results from the present study indicate that amines may be employed in more than one type of mechanistic strategy for catalyzing biogenic and biomimetic silica polymerization.
Source: openalex_inverted_index · Quality: baseline
Research context
OpenAlex topics: Diatoms and Algae Research · Protist diversity and phylogeny · Advanced biosensing and bioanalysis techniques
SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.
Affiliations
Department of Chemistry, 1101 University Avenue, University of Wisconsin, Madison, Wisconsin 53706, and Department of Geology and Geophysics, 1215 West Dayton Street, University of Wisconsin, Madison, Wisconsin 53706
References (49)
Show source-provided references
1. Iler R. K. · 1979
2. Poulsen N. · Proc. Natl. Acad. Sci. U.S.A. · 2003 · 100 · 1207510.1073/pnas.2035131100 ↗
3. Kroger N. · Science · 1999 · 286 · 112910.1126/science.286.5442.1129 ↗
4. Cha J. N. · Proc. Natl. Acad. Sci. U.S.A. · 1999 · 96 · 36110.1073/pnas.96.2.361 ↗
5. Kresge C. T. · Nature · 1992 · 359 · 71010.1038/359710a0 ↗
6. Sayari A. · Chem. Mater. · 2001 · 13 · 315110.1021/cm011039l ↗
7. Barton T. J. · Chem. Mater. · 1999 · 11 · 263310.1021/cm9805929 ↗
8. Kroger, N.; Sumper, M. InBiomineralization: From Biology toBiotechnology and Medical Application; Bauerlein, E., Ed.; Wiley-VCH: Weinheim, Germany, 2000; pp 151−170.
9. Martin-Jezequel V. · J. Phycol. · 2000 · 36 · 82110.1046/j.1529-8817.2000.00019.x ↗
10. Wetherbee R. · Science · 2002 · 298 · 54710.1126/science.1078222 ↗
11. Vrieling E. G. · J. Phycol. · 1999 · 35 · 54810.1046/j.1529-8817.1999.3530548.x ↗
12. Parkinson J. · Tibtech · 1999 · 17 · 19010.1016/S0167-7799(99)01321-9 ↗
13. Drum R. W. · Trends Biotechnol. · 2003 · 21 · 32510.1016/S0167-7799(03)00169-0 ↗
14. Kroger N. · J. Biol. Chem. · 2001 · 276 · 2606610.1074/jbc.M102093200 ↗
15. Zhou Y. · Angew. Chem., Int. Ed. · 1999 · 38 · 78010.1002/(SICI)1521-3773(19990315)38:6<779::AID-ANIE779>3.0.CO;2-# ↗
16. Kroger N. · Proc. Natl. Acad. Sci. U.S.A. · 2000 · 97 · 1413310.1073/pnas.260496497 ↗
17. Kroger N. · Science · 2002 · 298 · 58410.1126/science.1076221 ↗
18. Armbrust E. V. · Science · 2004 · 306 · 7910.1126/science.1101156 ↗
19. Coradin T. · J. ChemBioChem · 2003 · 4 · 25110.1002/cbic.200390044 ↗
20. Kinrade S. D. · J. Chem. Soc., Dalton Trans. · 2002 · 30710.1039/b105379p ↗
21. Sahai N. · Geochim. Cosmochim. Acta · 2001 · 65 · 204310.1016/S0016-7037(01)00577-4 ↗
22. Sahai N. · Geochim. Cosmochim. Acta · 2004 · 68 · 22710.1016/S0016-7037(03)00425-3 ↗
23. Shimizu K. · Proc. Natl. Acad. Sci. U.S.A. · 1998 · 95 · 623410.1073/pnas.95.11.6234 ↗
24. Menzel H. · Chem. Commun. · 2003 · 299410.1039/B310201G ↗
25. Vrieling E. G. · J. Phycol. · 2000 · 36 · 14610.1046/j.1529-8817.2000.99120.x ↗
26. Patwardhan S. V. · J. Chem. Commun. · 2003 · 112210.1039/b302056h ↗
27. Coradin T. · Colloids Surf. B · 2001 · 21 · 32910.1016/S0927-7765(01)00143-6 ↗
28. Coradin T. · Langmuir · 2002 · 18 · 233110.1021/la011106q ↗
29. Mizutani T. · Bull. Chem. Soc. Jpn. · 1998 · 71 · 201710.1246/bcsj.71.2017 ↗
30. Sumper M. · Science · 2002 · 295 · 243010.1126/science.1070026 ↗
31. Brunner E. · Phys. Chem. Chem. Phys. · 2004 · 6 · 85410.1039/b313261g ↗
32. Brinker C. J. · J. Non Cryst. Solids · 1988 · 100 · 3110.1016/0022-3093(88)90005-1 ↗
33. Osterholtz F. D. · J. Adhes. Sci. Technol. · 1992 · 6 · 12710.1163/156856192X00106 ↗
34. Fyfe C. A. · Chem. Mater. · 1995 · 7 · 180010.1021/cm00058a008 ↗
35. Rankin S. E. · J. Phys. Chem. A · 1999 · 103 · 423310.1021/jp990304b ↗
36. Rankin S. E. · Magn. Reson. Chem. · 1999 · 37 · S2710.1002/(SICI)1097-458X(199912)37:13<S27::AID-MRC576>3.0.CO;2-5 ↗
37. Corriu R. J. P. · 1990
38. Corriu R. J. P. · Organometallics · 1988 · 7 · 23710.1021/om00091a038 ↗
39. Delak K. M. · J. Non-Cryst. Sol., submitted for publication.
40. Vangeet A. L. · Anal. Chem. · 1970 · 42 · 67910.1021/ac60288a022 ↗
41. De Robertis A. · J. Chem. Eng. Data · 2001 · 46 · 142510.1021/je010143g ↗
42. De Stefano C. · Anal. Chim. Acta · 2000 · 418 · 4310.1016/S0003-2670(00)00945-4 ↗
43. Oszczapowicz J. · Talanta · 1984 · 31 · 55910.1016/0039-9140(84)80140-X ↗
44. Kilic E. · Turk. J. Chem. · 2002 · 26 · 843
45. Kilic E. · Anal. Chim. Acta. · 1994 · 294 · 21510.1016/0003-2670(94)80197-5 ↗
46. Parkhurst D. · 1995
47. Koper G. J. M. · Macromolecules · 2003 · 36 · 250010.1021/ma020819s ↗
48. Stryer, L.Biochemistry; W. H. Freeman and Co. New York, 1988.
49. Manning G. S. · Rev. Biophys. · 1978 · 11 · 17910.1017/S0033583500002031 ↗