journal article·2017-02-28Open access

Condensation and Demixing in Solutions of DNA Nanostars and Their Mixtures

Emanuele Locatelli, Philip H. Handle, Christos N. Likos, Francesco Sciortino, Lorenzo Rovigatti

ACS Nano· Volume 11· Issue 2

Abstract

We present a numerical/theoretical approach to efficiently evaluate the phase diagram of self-assembling DNA nanostars. Combining input information based on a realistic coarse-grained DNA potential with the Wertheim association theory, we derive a parameter-free thermodynamic description of these systems. We apply this method to investigate the phase behavior of single components and mixtures of DNA nanostars with different numbers of sticky arms, elucidating the role of the system functionality and of salt concentration. Specifically, we evaluate the propensity to demix, the gas-liquid phase boundaries and the location of the critical points. The predicted critical parameters compare very well with existing experimental results for the available compositions. The approach developed here is very general, easily extensible to other all-DNA systems, and provides guidance for future experiments.
Source: openalex_inverted_index · Quality: baseline

Research context

OpenAlex topics: Advanced biosensing and bioanalysis techniques · DNA and Nucleic Acid Chemistry · RNA Interference and Gene Delivery

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Faculty of Physics, University of Vienna, Boltzmanngasse 5, A-1090 Vienna, Austria

Dipartimento di Fisica, Sapienza-Università di Roma, Piazzale A. Moro 5, 00185 Roma, Italy

Istituto Sistemi Complessi (CNR-ISC), Via dei Taurini 19, 00185 Roma, Italy

Rudolf Peierls Centre for Theoretical Physics, 1 Keble Road, Oxford OX1 3NP, U.K.

Funding

Austrian Science Fund · H2020 Marie Sklodowska-Curie Actions

References (48)

Show source-provided references
1. Egli M. · 2013
2. 10.1016/0022-5193(82)90002-910.1016/0022-5193(82)90002-9 ↗
3. 10.1146/annurev.biophys.27.1.22510.1146/annurev.biophys.27.1.225 ↗
4. 10.1038/nnano.2013.23010.1038/nnano.2013.230 ↗
5. 10.1073/pnas.090938010710.1073/pnas.0909380107 ↗
6. 10.1038/nature0458610.1038/nature04586 ↗
7. 10.1021/nn302266210.1021/nn3022662 ↗
8. 10.1126/science.122726810.1126/science.1227268 ↗
9. 10.1039/C6SM01031H10.1039/C6SM01031H ↗
10. 10.5488/CMP.18.2280110.5488/CMP.18.22801 ↗
11. 10.1039/c3cp43841d10.1039/c3cp43841d ↗
12. 10.1126/science.126090110.1126/science.1260901 ↗
13. 10.1126/science.125976210.1126/science.1259762 ↗
14. 10.1038/2899810.1038/28998 ↗
15. 10.1038/nmat241910.1038/nmat2419 ↗
16. 10.1126/science.114382610.1126/science.1143826 ↗
17. 10.1073/pnas.130463211010.1073/pnas.1304632110 ↗
18. 10.1038/ncomms1319110.1038/ncomms13191 ↗
19. 10.1103/PhysRevLett.97.16830110.1103/PhysRevLett.97.168301 ↗
20. 10.1039/c0cp02296a10.1039/c0cp02296a ↗
21. 10.1063/1.484911510.1063/1.4849115 ↗
22. 10.1063/1.357818210.1063/1.3578182 ↗
23. 10.1038/nphys269310.1038/nphys2693 ↗
24. 10.1021/nn500147u10.1021/nn500147u ↗
25. 10.1007/BF0101736210.1007/BF01017362 ↗
26. 10.1007/BF0101736310.1007/BF01017363 ↗
27. 10.1063/1.475148010.1063/1.4751480 ↗
28. 10.1063/1.167204810.1063/1.1672048 ↗
29. 10.1063/1.492195710.1063/1.4921957 ↗
30. 10.1073/pnas.95.4.146010.1073/pnas.95.4.1460 ↗
31. 10.1146/annurev.biophys.32.110601.14180010.1146/annurev.biophys.32.110601.141800 ↗
32. 10.1140/epje/i2015-15064-910.1140/epje/i2015-15064-9 ↗
33. 10.1021/ma00191a08010.1021/ma00191a080 ↗
34. 10.1021/j100151a05710.1021/j100151a057 ↗
35. 10.1063/1.496139810.1063/1.4961398 ↗
36. 10.1063/1.487046710.1063/1.4870467 ↗
37. 10.1088/0953-8984/18/14/S1110.1088/0953-8984/18/14/S11 ↗
38. 10.1080/00268976.2015.106115010.1080/00268976.2015.1061150 ↗
39. 10.1063/1.480202610.1063/1.4802026 ↗
40. 10.1088/0953-8984/14/3/20110.1088/0953-8984/14/3/201 ↗
41. 10.1103/PhysRevLett.114.07810410.1103/PhysRevLett.114.078104 ↗
42. 10.1063/1.172375010.1063/1.1723750 ↗
43. Debenedetti P. G. · 1996
44. 10.1351/pac19692003027110.1351/pac196920030271 ↗
45. 10.1039/c3cp53545b10.1039/c3cp53545b ↗
46. 10.1039/C0SM00815J10.1039/C0SM00815J ↗
47. http://dna.physics.ox.ac.uk(accessed Feb 1, 2017) .
48. 10.1002/jcc.2376310.1002/jcc.23763 ↗