journal article·2016-09-27Open access

A MoS2-Based Capacitive Displacement Sensor for DNA Sequencing

Alex Smolyanitsky, Boris I. Yakobson, Tsjerk A. Wassenaar, Eugene Paulechka, Kenneth Kroenlein

ACS Nano· Volume 10· Issue 9

Abstract

We propose an aqueous functionalized molybdenum disulfide nanoribbon suspended over a solid electrode as a capacitive displacement sensor aimed at determining the DNA sequence. The detectable sequencing events arise from the combination of Watson-Crick base-pairing, one of nature's most basic lock-and-key binding mechanisms, with the ability of appropriately sized atomically thin membranes to flex substantially in response to subnanonewton forces. We employ carefully designed numerical simulations and theoretical estimates to demonstrate excellent (79% to 86%) raw target detection accuracy at ∼70 million bases per second and electrical measurability of the detected events. In addition, we demonstrate reliable detection of repeated DNA motifs. Finally, we argue that the use of a nanoscale opening (nanopore) is not requisite for the operation of the proposed sensor and present a simplified sensor geometry without the nanopore as part of the sensing element. Our results, therefore, potentially suggest a realistic, inherently base-specific, high-throughput electronic DNA sequencing device as a cost-effective de novo alternative to the existing methods.
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Research context

OpenAlex topics: Nanopore and Nanochannel Transport Studies · Advanced biosensing and bioanalysis techniques · Acoustic Wave Resonator Technologies

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Applied Chemicals and Materials Division, National Institute of Standards and Technology, Boulder, Colorado 80305, United States

Department of Materials Science and NanoEngineering, Rice University, Houston, Texas 77005, United States

Groningen Biomolecular Sciences and Biotechnology Institute and Zernike Institute for Advanced Materials, University of Groningen, 9747 AG Groningen, The Netherlands

Bioinformatics, Hanze University of Applied Sciences, 9747 AS Groningen, The Netherlands

Funding

Welch Foundation · Office of Naval Research · Materials Genome Initiative

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