journal article·2015-01-27Open access

Ion-Specific Control of the Self-Assembly Dynamics of a Nanostructured Protein Lattice

Behzad Rad, Thomas K. Haxton, Albert Shon, Seong-Ho Shin, Stephen Whitelam, Caroline M. Ajo-Franklin

ACS Nano· Volume 9· Issue 1

Abstract

Self-assembling proteins offer a potential means of creating nanostructures with complex structure and function. However, using self-assembly to create nanostructures with long-range order whose size is tunable is challenging, because the kinetics and thermodynamics of protein interactions depend sensitively on solution conditions. Here we systematically investigate the impact of varying solution conditions on the self-assembly of SbpA, a surface-layer protein from Lysinibacillus sphaericus that forms two-dimensional nanosheets. Using high-throughput light scattering measurements, we mapped out diagrams that reveal the relative yield of self-assembly of nanosheets over a wide range of concentrations of SbpA and Ca(2+). These diagrams revealed a localized region of optimum yield of nanosheets at intermediate Ca(2+) concentration. Replacement of Mg(2+) or Ba(2+) for Ca(2+) indicates that Ca(2+) acts both as a specific ion that is required to induce self-assembly and as a general divalent cation. In addition, we use competitive titration experiments to find that 5 Ca(2+) bind to SbpA with an affinity of 67.1 ± 0.3 μM. Finally, we show via modeling that nanosheet assembly occurs by growth from a negligibly small critical nucleus. We also chart the dynamics of nanosheet size over a variety of conditions. Our results demonstrate control of the dynamics and size of the self-assembly of a nanostructured lattice, the constituents of which are one of a class of building blocks able to form novel hybrid nanomaterials.
Source: openalex_inverted_index · Quality: baseline

Research context

OpenAlex topics: Pickering emulsions and particle stabilization · Polymer Surface Interaction Studies · Proteins in Food Systems

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Department of Chemical and Biomolecular Engineering, UC Berkeley, Berkeley, California 94720-1462, United States

Department of Chemistry, UC Berkeley, Berkeley, California 94720-1460, United States

Funding

Basic Energy Sciences · National Institute of General Medical Sciences

References (47)

Show source-provided references
1. Pavkov-Keller T. · Prog. Mol. Biol. Transl. Sci. · 2011 · 103 · 7310.1016/B978-0-12-415906-8.00004-2 ↗
2. Pum D. · Int. J. Mol. Sci. · 2013 · 14 · 248410.3390/ijms14022484 ↗
3. Brodin J. D. · Nat. Chem. · 2012 · 4 · 37510.1038/nchem.1290 ↗
4. Vekilov P. G. · Nanoscale · 2010 · 2 · 234610.1039/c0nr00628a ↗
5. Whitelam S. · Phys. Rev. Lett. · 2010 · 105 · 08810210.1103/PhysRevLett.105.088102 ↗
6. Haxton T. K. · Soft Matter · 2012 · 8 · 355810.1039/c2sm07436b ↗
7. Sleytr U. B. · Prog. Mol. Biol. Transl. Sci. · 2011 · 103 · 27710.1016/B978-0-12-415906-8.00003-0 ↗
8. Fagan R. P. · Nat. Rev. Microbiol. · 2014 · 12 · 21110.1038/nrmicro3213 ↗
9. Engelhardt H. · J. Struct. Biol. · 1998 · 124 · 27610.1006/jsbi.1998.4070 ↗
10. Badelt-Lichtblau H. · Bioconjugate Chem. · 2009 · 20 · 89510.1021/bc800445r ↗
11. Ilk N. · Biochem. J. · 2004 · 379 · 44110.1042/bj20031900 ↗
12. Ilk N. · Appl. Environ. Microbiol. · 2002 · 68 · 325110.1128/AEM.68.7.3251-3260.2002 ↗
13. Moll D. · Proc. Natl. Acad. Sci. U. S. A. · 2002 · 99 · 1464610.1073/pnas.232299399 ↗
14. Tschiggerl H. · J. Biotechnol. · 2008 · 133 · 40310.1016/j.jbiotec.2007.09.018 ↗
15. Shenton W. · Nature · 1997 · 389 · 58510.1038/39287 ↗
16. Pum D. · Colloids Surf., A · 1995 · 102 · 9910.1016/0927-7757(95)03190-O ↗
17. Korkmaz N. · Nanotechnology · 2011 · 22 · 09560110.1088/0957-4484/22/9/095601 ↗
18. Chung S. · Proc. Natl. Acad. Sci. U. S. A. · 2010 · 107 · 1653610.1073/pnas.1008280107 ↗
19. Norville J. E. · J. Struct. Biol. · 2007 · 160 · 31310.1016/j.jsb.2007.06.002 ↗
20. Teixeira L. M. · Macromol. Biosci. · 2010 · 10 · 14710.1002/mabi.200900175 ↗
21. Andreu J. M. · Methods Enzymol. · 1986 · 130 · 4710.1016/0076-6879(86)30007-7 ↗
22. Hurshman A. R. · Biochemistry · 2004 · 43 · 736510.1021/bi049621l ↗
23. Baranova E. · Nature · 2012 · 487 · 11910.1038/nature11155 ↗
24. Shin S. H. · Proc. Natl. Acad. Sci. U. S. A. · 2012 · 109 · 1296810.1073/pnas.1201504109 ↗
25. Allen K. N. · Curr. Opin. Chem. Biol. · 2010 · 14 · 24710.1016/j.cbpa.2010.01.004 ↗
26. Selvin P. R. · Annu. Rev. Biophys. Biomol. Struct. · 2002 · 31 · 27510.1146/annurev.biophys.31.101101.140927 ↗
27. Eftink M. R. · Methods Enzymol. · 1997 · 278 · 22110.1016/S0076-6879(97)78013-3 ↗
28. Thomä N. · 2003 · 15310.1093/oso/9780198524946.003.0007 ↗
29. Horejs C. · ACS Nano · 2011 · 5 · 228810.1021/nn1035729 ↗
30. Gasteiger E. · 2005 · 57110.1385/1-59259-890-0:571 ↗
31. Wong G. C. · Annu. Rev. Phys. Chem. · 2010 · 61 · 17110.1146/annurev.physchem.58.032806.104436 ↗
32. Sleytr U. B. · Angew. Chem. · 1999 · 38 · 103410.1002/(SICI)1521-3773(19990419)38:8<1034::AID-ANIE1034>3.0.CO;2-# ↗
33. Dominguez D. C. · Mol. Microbiol. · 2004 · 54 · 29110.1111/j.1365-2958.2004.04276.x ↗
34. Norris V. · J. Bacteriol. · 1996 · 178 · 367710.1128/jb.178.13.3677-3682.1996 ↗
35. Knobel, L. L.; Bartholomay, R. C.; Cecil, L. D.; Tucker, B. J.; Wegner, S. J.Chemical Constituents in the Dissolved and Suspended Fractions of Ground Water from Selected Sites, Idaho National Engineering Laboratory and Vicinity, Idaho, 1989;U.S. Dept. of the Interior, U.S. Geological Survey:Washington, D.C., 1992; Books and Open-File Reports Section, Series 92–51, p54.10.3133/ofr9251 ↗
36. Selzer T. · Nat. Struct. Biol. · 2000 · 7 · 53710.1038/76744 ↗
37. Zhang F. J. · J. Appl. Crystallogr. · 2011 · 44 · 75510.1107/S0021889811017997 ↗
38. Schuster B. · Methods Mol. Biol. · 2005 · 300 · 101
39. Gill S. C. · Anal. Biochem. · 1989 · 182 · 31910.1016/0003-2697(89)90602-7 ↗
40. Shin S. H. · ACS Nano · 2013 · 7 · 494610.1021/nn400263j ↗
41. Schneider C. A. · Nat. Methods · 2012 · 9 · 67110.1038/nmeth.2089 ↗
42. Voros J. · Biophys. J. · 2004 · 87 · 55310.1529/biophysj.103.030072 ↗
43. Querry M. R. · 1997 · 105910.1016/B978-012544415-6.50095-9 ↗
44. Hura G. L. · Nat. Methods · 2009 · 6 · 60610.1038/nmeth.1353 ↗
45. Konarev P. V. · J. Appl. Crystallogr. · 2003 · 36 · 127710.1107/S0021889803012779 ↗
46. Schiffer R. · J. Appl. Phys. · 1979 · 50 · 247610.1063/1.326257 ↗
47. Ferri J. K. · Adv. Colloid Interface Sci. · 2000 · 85 · 6110.1016/S0001-8686(99)00027-5 ↗