journal article·2012-10-23

Electrically Induced Conformational Change of Peptides on Metallic Nanosurfaces

Yi Chen, Eduardo R. Cruz-Chu, Jaie C. Woodard, Manas R. Gartia, Klaus Schulten, Logan Liu

ACS Nano· Volume 6· Issue 10
Publisher page

Abstract

Surface immobilized biomolecular probes are used in many areas of biomedical research, such as genomics, proteomics, immunology, and pathology. Although the structural conformations of small DNA and peptide molecules in free solution are well studied both theoretically and experimentally, the conformation of small biomolecules bound on surfaces, especially under the influence of external electric fields, is poorly understood. Using a combination of molecular dynamics simulation and surface-enhanced Raman spectroscopy, we study the external electric field-induced conformational change of dodecapeptide probes tethered to a nanostructured metallic surface. Surface-tethered peptides with and without phosphorylated tyrosine residues are compared to show that peptide conformational change under electric field is sensitive to biochemical modification. Our study proposes a highly sensitive in vitro nanoscale electro-optical detection and manipulation method for biomolecule conformation and charge at bio-nano interfaces.
Source: openalex_inverted_index · Quality: baseline

Research context

OpenAlex topics: Advanced biosensing and bioanalysis techniques · Gold and Silver Nanoparticles Synthesis and Applications · Molecular Junctions and Nanostructures

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Micro and Nanotechnology Laboratory, University of Illinois at Urbana−Champaign, ‡Department of Electrical and Computer Engineering, University of Illinois at Urbana−Champaign, §Center for Biophysics and Computational Biology, University of Illinois at Urbana−Champaign, ⊥Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana−Champaign, ∥Department of Nuclear, Plasma and Radiological Engineering, University of Illinois at Urbana−Champaign, and △Department of Physics,...

References (48)

Show source-provided references
1. Huang Z. · Chem. Soc. Rev. · 2011 · 40 · 235910.1039/c0cs00148a ↗
2. Tashiro R. · J. Am. Chem. Soc. · 2005 · 127 · 209410.1021/ja044138j ↗
3. Saha S. · Chem. Soc. Rev. · 2007 · 36 · 7710.1039/B607187B ↗
4. Heath J. R. · Annu. Rev. Mater. Res. · 2009 · 39 · 110.1146/annurev-matsci-082908-145401 ↗
5. Ariga K. · Chem. Sci. · 2011 · 2 · 19510.1039/C0SC00300J ↗
6. Duriska M. B. · Angew. Chem. · 2009 · 121 · 258710.1002/ange.200805178 ↗
7. Browne W. R. · Annu. Rev. Phys. Chem. · 2009 · 60 · 40710.1146/annurev.physchem.040808.090423 ↗
8. Joachim C. · Nature · 2000 · 408 · 54110.1038/35046000 ↗
9. Kang T. · J. Am. Chem. Soc. · 2006 · 128 · 1287010.1021/ja0632198 ↗
10. Crescenzi O. · Eur. J. Biochem. · 2002 · 269 · 564210.1046/j.1432-1033.2002.03271.x ↗
11. Latz E. · Nat. Immunol. · 2007 · 8 · 77210.1038/ni1479 ↗
12. Anker J. N. · Nat. Mater. · 2008 · 7 · 44210.1038/nmat2162 ↗
13. Chou I. H. · Nano Lett. · 2008 · 8 · 172910.1021/nl0808132 ↗
14. Love J. C. · Chem. Rev. · 2005 · 105 · 110310.1021/cr0300789 ↗
15. Sallinen S.-L. · Cancer Res. · 2000 · 60 · 6617
16. Phizicky E. · Nature · 2003 · 422 · 20810.1038/nature01512 ↗
17. Endo T. · Anal. Chem. · 2006 · 78 · 646510.1021/ac0608321 ↗
18. Eggeling C. · Proc. Natl. Acad. Sci. U. S. A. · 1998 · 95 · 155610.1073/pnas.95.4.1556 ↗
19. Krimm S. · Adv. Protein Chem. · 1986 · 38 · 18110.1016/S0065-3233(08)60528-8 ↗
20. Wishart D. S. · J. Mol. Biol. · 1991 · 222 · 31110.1016/0022-2836(91)90214-Q ↗
21. Bialik S. · Annu. Rev. Biochem. · 2006 · 75 · 18910.1146/annurev.biochem.75.103004.142615 ↗
22. Kennedy B. J. · J. Phys. Chem. B · 1999 · 103 · 364010.1021/jp984454i ↗
23. Gartia M. R. · J. Phys. Chem. A · 2011 · 115 · 31810.1021/jp1065083 ↗
24. Albrecht M. G. · J. Am. Chem. Soc. · 1977 · 99 · 521510.1021/ja00457a071 ↗
25. Caliper Life Sciences.http://www.caliperls.com/(accessed Jul 10, 2012) .
26. Zhu K. · Anal. Chem. · 2005 · 77 · 274510.1021/ac048494w ↗
27. Chen Y. · ACS Nano · 2011 · 5 · 800210.1021/nn2024754 ↗
28. Oh Y.-J. · Adv. Mater. · 2012 · 24 · 223410.1002/adma.201104696 ↗
29. Xu Z. · Appl. Phys. Lett. · 2011 · 98 · 241904-1
30. Lee E. H. · Structure · 2009 · 17 · 129510.1016/j.str.2009.09.001 ↗
31. Brolo A. G. · Langmuir · 1998 · 14 · 51710.1021/la970051i ↗
32. Houseman B. T. · Nat. Biotechnol. · 2002 · 20 · 27010.1038/nbt0302-270 ↗
33. Chen Y. · IEEE Sens. 2010 · 2010 · 229510.1109/ICSENS.2010.5690802 ↗
34. Coppé J.-P. · Nanotechnology · 2011 · 22 · 24571010.1088/0957-4484/22/24/245710 ↗
35. Jeanmaire D. L. · J. Electroanal. Chem. Interfacial Electrochem. · 1977 · 84 · 110.1016/S0022-0728(77)80224-6 ↗
36. Phillips J. C. · J. Comput. Chem. · 2005 · 26 · 178110.1002/jcc.20289 ↗
37. Cruz-Chu E. R. · J. Phys. Chem. C · 2009 · 113 · 185010.1021/jp804724p ↗
38. Braun R. · J. Biomater. Sci., Polym. Ed. · 2002 · 13 · 74710.1163/156856202760197384 ↗
39. Lu D. · Phys. Biol. · 2006 · 3 · S4010.1088/1478-3975/3/1/S05 ↗
40. Aksimentiev A. · 2008 · 474 · 18110.1007/978-1-59745-480-3_11 ↗
41. Willett R. L. · Proc. Natl. Acad. Sci. U. S. A. · 2005 · 102 · 781710.1073/pnas.0408565102 ↗
42. MacKerell A. D. · J. Phys. Chem. B · 1998 · 102 · 358610.1021/jp973084f ↗
43. MacKerell A. D. · J. Comput. Chem. · 2004 · 25 · 158410.1002/jcc.20082 ↗
44. Buck M. · Biophys. J. · 2006 · 90 · L3610.1529/biophysj.105.078154 ↗
45. Jorgensen W. L. · J. Chem. Phys. · 1983 · 79 · 92610.1063/1.445869 ↗
46. Bizzarri A. R. · Biophys. Chem. · 2003 · 106 · 11110.1016/S0301-4622(03)00156-X ↗
47. Heinz H. · J. Phys. Chem. C · 2008 · 112 · 1728110.1021/jp801931d ↗
48. Vaiana A. C. · J. Comput. Chem. · 2003 · 24 · 63210.1002/jcc.10190 ↗