journal article·2026-08Open access

DNA‐Enzyme Hybrid Nanostructures: Functional Materials to Modulate Enzymatic Activity

Manar Elnaggar, Amelie Heuer‐Jungemann

Small· Volume 22· Issue 43

Abstract

ABSTRACT DNA nanotechnology enables the precise assembly of complex and versatile 2‐dimensional (2D) and 3‐dimensional (3D) nanostructures. Coupling enzymes to such DNA nanostructures offers great control over the enzymes’ positioning and stoichiometry to modify their activity and unleash their maximum catalytic capacity. While enzymes hosted on DNA nanostructures have shown predominantly enhanced enzymatic activity, existing hypotheses such as proximity effects, electrostatic interactions, and pH modulation fail to fully account for the observed enhancement. Protection against enzymatic deactivation plays a role, but additional mechanisms, including potential hydration layer stabilization, require further investigation. Furthermore, spatial proximity alone does not guarantee efficiency in multi‐enzyme cascades, particularly in systems with unbalanced kinetics. Another big challenge remains when it comes to addressing disproportionally large enzymes. In this review, we summarize recent literature on DNA‐enzyme hybrid nanostructures and critically discuss the proposed hypotheses, aiming to shed light on the change in enzymatic activity upon conjugation to DNA nanostructures. We highlight gaps and remaining open questions in the field as well as giving a brief overview of potential applications of such DNA‐enzyme hybrid nanostructures.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Advanced biosensing and bioanalysis techniques · Supramolecular Self-Assembly in Materials · DNA and Nucleic Acid Chemistry

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Max Planck Institute of Biochemistry Center for Nanoscience LMU Munich Germany

Faculty of Chemistry and Chemical Biology Research Center One Health Ruhr TU Dortmund University Dortmund Germany

References (100+)

Show source-provided references
1. 10.1016/j.ces.2005.05.06710.1016/j.ces.2005.05.067 ↗
2. 10.1039/C3CS60075K10.1039/C3CS60075K ↗
3. 10.1039/C3CS60059A10.1039/C3CS60059A ↗
4. 10.1016/j.gce.2023.07.00210.1016/j.gce.2023.07.002 ↗
5. 10.1002/bmm2.1208010.1002/bmm2.12080 ↗
6. 10.1016/j.copbio.2015.04.00510.1016/j.copbio.2015.04.005 ↗
7. 10.3390/catal1001008310.3390/catal10010083 ↗
8. 10.1016/B978-0-323-98350-1.00006-210.1016/B978-0-323-98350-1.00006-2 ↗
9. 10.1016/j.biotechadv.2011.07.00710.1016/j.biotechadv.2011.07.007 ↗
10. 10.1021/acsomega.2c0756010.1021/acsomega.2c07560 ↗
11. 10.3390/catal1110121110.3390/catal11101211 ↗
12. 10.1039/C7CS00058H10.1039/C7CS00058H ↗
13. 10.1039/D3TB01112G10.1039/D3TB01112G ↗
14. 10.1016/0022‐5193(82)90002‐910.1016/0022‐5193(82)90002‐9 ↗
15. 10.1038/s43586‐020‐00009‐810.1038/s43586‐020‐00009‐8 ↗
16. 10.1038/nature0458610.1038/nature04586 ↗
17. 10.3390/molecules2414257710.3390/molecules24142577 ↗
18. 10.1038/s41467‐020‐18910‐x10.1038/s41467‐020‐18910‐x ↗
19. 10.1126/science.117425110.1126/science.1174251 ↗
20. 10.1038/s41565‐024‐01738‐710.1038/s41565‐024‐01738‐7 ↗
21. 10.1038/s41467‐025‐56846‐210.1038/s41467‐025‐56846‐2 ↗
22. 10.1038/nprot.2014.07910.1038/nprot.2014.079 ↗
23. 10.1039/c4cc08472a10.1039/c4cc08472a ↗
24. 10.1002/anie.20120696210.1002/anie.201206962 ↗
25. 10.1002/cbic.20160022410.1002/cbic.201600224 ↗
26. 10.1021/acscatal.6b0343110.1021/acscatal.6b03431 ↗
27. 10.1039/D0CC01174F10.1039/D0CC01174F ↗
28. 10.1016/j.bbrc.2008.09.07810.1016/j.bbrc.2008.09.078 ↗
29. 10.1038/nnano.2009.5010.1038/nnano.2009.50 ↗
30. 10.1557/mrs.2017.26910.1557/mrs.2017.269 ↗
31. 10.3390/molecules2420369410.3390/molecules24203694 ↗
32. 10.3390/molecules2719630910.3390/molecules27196309 ↗
33. 10.1002/anie.20170380610.1002/anie.201703806 ↗
34. 10.1002/anie.20231445210.1002/anie.202314452 ↗
35. 10.1021/nn403054310.1021/nn4030543 ↗
36. 10.1021/acsnano.9b0185710.1021/acsnano.9b01857 ↗
37. 10.1021/acsnano.5c1073410.1021/acsnano.5c10734 ↗
38. 10.1038/s41467‐017‐01072‐810.1038/s41467‐017‐01072‐8 ↗
39. 10.1039/d0sc03498c10.1039/d0sc03498c ↗
40. 10.1021/acsami.4c1819210.1021/acsami.4c18192 ↗
41. 10.1126/sciadv.abk042510.1126/sciadv.abk0425 ↗
42. 10.3389/fchem.2021.69785710.3389/fchem.2021.697857 ↗
43. 10.1002/sstr.20200003810.1002/sstr.202000038 ↗
44. 10.1038/s41929‐019‐0403‐710.1038/s41929‐019‐0403‐7 ↗
45. 10.1039/d0nr07618j10.1039/d0nr07618j ↗
46. 10.1039/D1CC00876E10.1039/D1CC00876E ↗
47. 10.1038/ncomms1061910.1038/ncomms10619 ↗
48. 10.1002/chem.20250330510.1002/chem.202503305 ↗
49. 10.1021/ja300897h10.1021/ja300897h ↗
50. 10.1021/ja307669210.1021/ja3076692 ↗
51. 10.1021/jacsau.1c0038710.1021/jacsau.1c00387 ↗
52. 10.1038/ncomms1398210.1038/ncomms13982 ↗
53. 10.1021/jacs.5b1019810.1021/jacs.5b10198 ↗
54. 10.1038/nnano.2014.10010.1038/nnano.2014.100 ↗
55. 10.1002/cbic.20160010310.1002/cbic.201600103 ↗
56. 10.1021/acs.nanolett.4c0113710.1021/acs.nanolett.4c01137 ↗
57. 10.1002/anie.20160318310.1002/anie.201603183 ↗
58. 10.1016/j.bmc.2019.11512010.1016/j.bmc.2019.115120 ↗
59. 10.1002/smll.20210509510.1002/smll.202105095 ↗
60. 10.1039/D1CC00276G10.1039/D1CC00276G ↗
61. 10.1039/D1CC04162B10.1039/D1CC04162B ↗
62. 10.1021/acs.langmuir.2c0206410.1021/acs.langmuir.2c02064 ↗
63. 10.1002/smll.20230457810.1002/smll.202304578 ↗
64. 10.1021/acsnano.9b0574610.1021/acsnano.9b05746 ↗
65. 10.1021/acs.chemrev.8b0057010.1021/acs.chemrev.8b00570 ↗
66. 10.3390/nano1109242410.3390/nano11092424 ↗
67. 10.1016/j.cbpa.2024.10244510.1016/j.cbpa.2024.102445 ↗
68. 10.1007/s41061‐020‐00305‐710.1007/s41061‐020‐00305‐7 ↗
69. 10.1371/journal.pone.031979010.1371/journal.pone.0319790 ↗
70. 10.3390/molecules2803108310.3390/molecules28031083 ↗
71. 10.1002/cbic.20170061310.1002/cbic.201700613 ↗
72. 10.1002/smll.20210167810.1002/smll.202101678 ↗
73. 10.1002/smll.20250249010.1002/smll.202502490 ↗
74. 10.1039/D2CC05335G10.1039/D2CC05335G ↗
75. 10.1039/C9CC04002A10.1039/C9CC04002A ↗
76. 10.1002/smtd.20240155910.1002/smtd.202401559 ↗
77. 10.1002/1521‐3773(20010601)40:1110.1002/1521‐3773(20010601)40:11 ↗
78. 10.1039/C1JM11558H10.1039/C1JM11558H ↗
79. 10.1002/cbic.20220001610.1002/cbic.202200016 ↗
80. 10.1021/acs.chemrev.1c0046910.1021/acs.chemrev.1c00469 ↗
81. 10.1126/science.106007710.1126/science.1060077 ↗
82. 10.1039/C8PY01719K10.1039/C8PY01719K ↗
83. 10.1021/acsami.8b1237410.1021/acsami.8b12374 ↗
84. 10.1002/smtd.20240140110.1002/smtd.202401401 ↗
85. 10.1104/pp.19.0088510.1104/pp.19.00885 ↗
86. 10.1073/pnas.110855710910.1073/pnas.1108557109 ↗
87. 10.1039/d4cb00308j10.1039/d4cb00308j ↗
88. 10.1073/pnas.070920710410.1073/pnas.0709207104 ↗
89. 10.1021/acscentsci.7b0010010.1021/acscentsci.7b00100 ↗
90. 10.1016/j.bpj.2012.05.01910.1016/j.bpj.2012.05.019 ↗
91. 10.1093/nar/gkx113510.1093/nar/gkx1135 ↗
92. 10.1128/aem.61.4.1580‐1585.199510.1128/aem.61.4.1580‐1585.1995 ↗
93. 10.1016/j.jmb.2005.04.02910.1016/j.jmb.2005.04.029 ↗
94. 10.1002/bit.2075310.1002/bit.20753 ↗
95. 10.1093/nar/gkw23710.1093/nar/gkw237 ↗
96. 10.1021/acscatal.5b0013010.1021/acscatal.5b00130 ↗
97. 10.1021/cs300766d10.1021/cs300766d ↗
98. 10.1063/5.016711710.1063/5.0167117 ↗
99. 10.1039/C0SC00407C10.1039/C0SC00407C ↗
100. 10.1038/nnano.2016.5410.1038/nnano.2016.54 ↗