journal article·2026-05

NPM1 Undergoes Salt‐Dependent Reentrant Phase Separation Driven by IDR Conformational Plasticity and Electrostatic Crosstalk

Yanning Zhen, Yuan Tan, Yiming Tang, Tomas Sneideris, Hannes Ausserwöger, Jitao Wen, Tuomas P. J. Knowles, Sarah Perrett, Guanghong Wei, Si Wu

Small· Volume 22· Issue 28
Publisher page

Abstract

ABSTRACT The liquid‐liquid phase separation (LLPS) of nucleophosmin1 (NPM1) is essential for the assembly of pre‐ribosomal subunits. However, the interplay between the conformational transitions of the intrinsically disordered region (IDR) of NPM1 and its biologically critical phase transition remains poorly understood. Here, we uncover a salt‐concentration‐dependent reentrant phase behavior of NPM1 originating from electrostatically driven IDR plasticity. By integrating molecular dynamics (MD) simulations and single‐molecule Förster resonance energy transfer (smFRET) techniques, we demonstrate that low salt concentrations stabilize intrachain interactions, maintaining a compact conformation that suppresses intermolecular contact and thereby inhibits LLPS. At intermediate ionic strengths, weakened intrachain interactions result in conformational extension, enabling interchain electrostatic networks that facilitate LLPS. Excessive charge screening at high salt concentrations disrupts both intra‐ and intermolecular interactions, leading to condensate dissolution. Our study establishes a mechanistic framework linking conformational plasticity, intra‐ and interchain electrostatic interactions, and phase behavior, expanding our understanding of how dynamic molecular architectures of the NPM1 IDR govern biomolecular condensate assembly and its functions in ribosome biogenesis within the granular component region of the nucleolus.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: RNA and protein synthesis mechanisms · RNA modifications and cancer · Nuclear Structure and Function

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

State Key Laboratory of Biomacromolecules Institute of Biophysics Chinese Academy of Sciences Beijing China

University of the Chinese Academy of Sciences Beijing China

Department of Physics State Key Laboratory of Surface Physics and Key Laboratory for Computational Physical Sciences (Ministry of Education) Shanghai China

Centre for Misfolding Diseases Yusuf Hamied Department of Chemistry University of Cambridge Cambridge UK

Funding

National Natural Science Foundation of China · National Key Research and Development Program of China · Natural Science Foundation of Beijing Municipality · European Research Council · Frances and Augustus Newman Foundation

References (79)

Show source-provided references
1. 10.1021/acs.biochem.7b0113610.1021/acs.biochem.7b01136 ↗
2. 10.1038/s41580‐020‐0272‐610.1038/s41580‐020‐0272‐6 ↗
3. 10.1038/nrm218410.1038/nrm2184 ↗
4. 10.1038/s41586‐020‐2256‐210.1038/s41586‐020‐2256‐2 ↗
5. 10.1016/j.molcel.2023.08.00610.1016/j.molcel.2023.08.006 ↗
6. 10.1038/s41589‐023‐01477‐110.1038/s41589‐023‐01477‐1 ↗
7. 10.1016/s1097‐2765(03)00431‐310.1016/s1097‐2765(03)00431‐3 ↗
8. 10.1096/fj.14‐26952210.1096/fj.14‐269522 ↗
9. 10.1158/2159‐8290.Cd‐22‐042410.1158/2159‐8290.Cd‐22‐0424 ↗
10. 10.1128/mcb.25.20.8874‐8886.200510.1128/mcb.25.20.8874‐8886.2005 ↗
11. 10.1093/jb/mvad06110.1093/jb/mvad061 ↗
12. 10.1038/s41467‐018‐03255‐310.1038/s41467‐018‐03255‐3 ↗
13. 10.7554/eLife.1357110.7554/eLife.13571 ↗
14. 10.1038/s41467‐018‐07530‐110.1038/s41467‐018‐07530‐1 ↗
15. 10.1155/2011/19520910.1155/2011/195209 ↗
16. 10.1016/j.str.2004.09.01710.1016/j.str.2004.09.017 ↗
17. 10.1093/nar/gkt89710.1093/nar/gkt897 ↗
18. 10.1073/pnas.132100711110.1073/pnas.1321007111 ↗
19. 10.1074/jbc.M20441120010.1074/jbc.M204411200 ↗
20. 10.1016/j.molcel.2022.05.01810.1016/j.molcel.2022.05.018 ↗
21. 10.1016/j.cell.2020.03.05010.1016/j.cell.2020.03.050 ↗
22. 10.1038/nature1087910.1038/nature10879 ↗
23. 10.1016/j.cell.2018.10.04810.1016/j.cell.2018.10.048 ↗
24. 10.1074/jbc.M40326420010.1074/jbc.M403264200 ↗
25. 10.1242/jcs.04446110.1242/jcs.044461 ↗
26. 10.1126/science.aaw915710.1126/science.aaw9157 ↗
27. 10.1021/jacs.9b1089210.1021/jacs.9b10892 ↗
28. 10.1039/c4cs00144c10.1039/c4cs00144c ↗
29. 10.1038/s41467‐021‐21181‐910.1038/s41467‐021‐21181‐9 ↗
30. 10.1002/anie.20170319110.1002/anie.201703191 ↗
31. 10.1021/acs.biochem.8b0000110.1021/acs.biochem.8b00001 ↗
32. 10.1039/d1sm01557e10.1039/d1sm01557e ↗
33. 10.1101/2024.05.23.59532110.1101/2024.05.23.595321 ↗
34. 10.1038/nature2298910.1038/nature22989 ↗
35. 10.1016/j.jmb.2022.16756210.1016/j.jmb.2022.167562 ↗
36. 10.1038/s41467‐022‐35265‐710.1038/s41467‐022‐35265‐7 ↗
37. 10.1038/s41467‐025‐62437‐y10.1038/s41467‐025‐62437‐y ↗
38. 10.1101/2023.06.12.54466610.1101/2023.06.12.544666 ↗
39. 10.1103/PhysRevX.12.04103810.1103/PhysRevX.12.041038 ↗
40. 10.1103/PhysRevApplied.23.06401710.1103/PhysRevApplied.23.064017 ↗
41. 10.1021/jacs.5c0729510.1021/jacs.5c07295 ↗
42. 10.1021/jacs.4c0894610.1021/jacs.4c08946 ↗
43. 10.1002/0471142727.mb0419s10310.1002/0471142727.mb0419s103 ↗
44. 10.1002/0471142727.mb0722s11310.1002/0471142727.mb0722s113 ↗
45. 10.1074/jbc.M00327820010.1074/jbc.M003278200 ↗
46. 10.1016/j.jmr.2019.10664610.1016/j.jmr.2019.106646 ↗
47. 10.1016/j.bpj.2021.11.00310.1016/j.bpj.2021.11.003 ↗
48. 10.1371/journal.pcbi.100594110.1371/journal.pcbi.1005941 ↗
49. 10.1038/s41594‐019‐0250‐x10.1038/s41594‐019‐0250‐x ↗
50. 10.1002/smll.20240642910.1002/smll.202406429 ↗
51. 10.1021/acs.jcim.5c0032110.1021/acs.jcim.5c00321 ↗
52. 10.1021/ja068002s10.1021/ja068002s ↗
53. 10.1126/science.aan113310.1126/science.aan1133 ↗
54. 10.1021/cr400297g10.1021/cr400297g ↗
55. 10.1073/pnas.231640812110.1073/pnas.2316408121 ↗
56. 10.1073/pnas.132261111110.1073/pnas.1322611111 ↗
57. 10.1002/anie.20201680410.1002/anie.202016804 ↗
58. 10.1093/jb/mvm22210.1093/jb/mvm222 ↗
59. 10.1038/s41557‐020‐0465‐910.1038/s41557‐020‐0465‐9 ↗
60. 10.1038/s41467‐017‐00480‐010.1038/s41467‐017‐00480‐0 ↗
61. 10.1021/jacsau.5c0062510.1021/jacsau.5c00625 ↗
62. 10.1073/pnas.130474911010.1073/pnas.1304749110 ↗
63. 10.1002/advs.20230958810.1002/advs.202309588 ↗
64. 10.1016/j.ijbiomac.2023.12775410.1016/j.ijbiomac.2023.127754 ↗
65. 10.3390/ijms2117620810.3390/ijms21176208 ↗
66. 10.3390/biom1204056110.3390/biom12040561 ↗
67. 10.1073/pnas.151627711310.1073/pnas.1516277113 ↗
68. 10.1021/jacs.8b1348310.1021/jacs.8b13483 ↗
69. 10.1073/pnas.211169611810.1073/pnas.2111696118 ↗
70. 10.1016/j.bpj.2017.04.02110.1016/j.bpj.2017.04.021 ↗
71. 10.1074/jbc.M115.67360810.1074/jbc.M115.673608 ↗
72. 10.1021/ac980656z10.1021/ac980656z ↗
73. 10.1063/1.497669010.1063/1.4976690 ↗
74. 10.1002/advs.20251154510.1002/advs.202511545 ↗
75. 10.1016/j.commatsci.2019.10936310.1016/j.commatsci.2019.109363 ↗
76. 10.1088/0965‐0393/18/1/01501210.1088/0965‐0393/18/1/015012 ↗
77. 10.1021/jacs.7b1043910.1021/jacs.7b10439 ↗
78. 10.1039/c7cc03032k10.1039/c7cc03032k ↗
79. 10.1073/pnas.060435310410.1073/pnas.0604353104 ↗