journal article·2025-10Open access

Self‐Assembly of Off‐Target Peptide Sequences: Implications for the Design of Soft Materials

Yanyao Wang, Ravi R. Sonani, Libby Marshall, Simona Bianco, Karen Marshall, Alice Pincham, Honghui Yang, Louise C. Serpell, Annela M. Seddon, Edward H. Egelman, Andrew R. Thomson, Dave J. Adams

Small· Volume 21· Issue 42

Abstract

Abstract The self‐assembly of short peptides into defined nanostructures is one method for preparing soft materials and gels. Indeed, many useful materials can be prepared by the self‐assembly of oligopeptides. The design rules around such peptides are relatively established, and they assume well‐defined and pure materials. In many cases, however, the purity of the peptide is less than 95%, and the ability of likely impurities to self‐assemble is an open question. Here, the self‐assembly of the gel‐forming octapeptide FEFEFKFK and two analogues, EFEFKFK and FEFEfKFK, is discussed to examine the effect of an amino acid deletion and of epimerization at one position. Both the truncated peptide and epimerized peptide can still form gels. Mixing these peptides with the parent FEFEFKFK leads to the formation of new, but different, self‐assembled structures. This has direct implications for the understanding of the necessary design rules for self‐assembly regarding the influence of potential impurity in these systems, as well as demonstrating that much remains to be learned about sequence to structure relationships in self‐assembling peptide systems.
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Research context

OpenAlex topics: Supramolecular Self-Assembly in Materials · Chemical Synthesis and Analysis · Polydiacetylene-based materials and applications

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Department of Applied Chemistry Xi'an Jiaotong University Xi'an 710049 P. R. China

School of Chemistry University of Glasgow Glasgow G12 8QQ UK

Department of Biochemistry and Molecular Genetics University of Virginia Charlottesville VA 22903 USA

Sussex Neuroscience School of Life Sciences University of Sussex Brighton BN1 9QG UK

School of Physics HH Wills Physics Laboratory University of Bristol Bristol BS8 1TL UK

Funding

National Science Foundation · NIH Blueprint for Neuroscience Research · Engineering and Physical Sciences Research Council

References (32)

Show source-provided references
1. 10.1039/D3SM01301D10.1039/D3SM01301D ↗
2. 10.1016/j.pmatsci.2024.10124010.1016/j.pmatsci.2024.101240 ↗
3. 10.1080/25740881.2022.211389210.1080/25740881.2022.2113892 ↗
4. 10.3389/fbioe.2021.67952510.3389/fbioe.2021.679525 ↗
5. Growth factor specialists: High quality conventional High versatility PODS https://www.cellgs.com/items/defined‐surfaces‐and‐ecms/peptigels.html(accessed: December2024).
6. 10.1021/acs.chemrev.0c0069010.1021/acs.chemrev.0c00690 ↗
7. 10.1016/j.cossms.2004.01.01010.1016/j.cossms.2004.01.010 ↗
8. 10.1163/156856298X0066810.1163/156856298X00668 ↗
9. 10.1016/j.actbio.2012.08.04410.1016/j.actbio.2012.08.044 ↗
10. 10.1002/masy.20085132010.1002/masy.200851320 ↗
11. 10.1002/masy.20075051210.1002/masy.200750512 ↗
12. 10.1039/B811288F10.1039/B811288F ↗
13. 10.1016/j.matbio.2019.06.00910.1016/j.matbio.2019.06.009 ↗
14. 10.1016/j.matt.2021.06.03710.1016/j.matt.2021.06.037 ↗
15. 10.1073/pnas.040684710210.1073/pnas.0406847102 ↗
16. 10.1016/j.cossms.2023.10106610.1016/j.cossms.2023.101066 ↗
17. 10.1021/acsami.4c1990010.1021/acsami.4c19900 ↗
18. 10.1021/acs.biomac.0c0036610.1021/acs.biomac.0c00366 ↗
19. 10.1021/ja011535a10.1021/ja011535a ↗
20. 10.1002/bip.2224810.1002/bip.22248 ↗
21. 10.1021/acs.biomac.6b0169310.1021/acs.biomac.6b01693 ↗
22. 10.1021/acs.biomac.4c0023210.1021/acs.biomac.4c00232 ↗
23. 10.1038/nmeth0310-18710.1038/nmeth0310-187 ↗
24. 10.1021/jacs.9b0975510.1021/jacs.9b09755 ↗
25. 10.1063/5.014230210.1063/5.0142302 ↗
26. 10.1021/acs.biomac.4c0015110.1021/acs.biomac.4c00151 ↗
27. 10.1021/acs.chemrev.1c0075310.1021/acs.chemrev.1c00753 ↗
28. 10.1021/acsnano.4c0804310.1021/acsnano.4c08043 ↗
29. 10.1096/fj.01-0442hyp10.1096/fj.01-0442hyp ↗
30. 10.1021/cr100357h10.1021/cr100357h ↗
31. 10.1039/c2cs35106d10.1039/c2cs35106d ↗
32. 10.1038/s41563-023-01765-010.1038/s41563-023-01765-0 ↗