journal article·2025-07Open access

Nonequilibrium Self‐Assembly of Microtubules Through Stepwise Sequential Interactions of DNA

Jakia Jannat Keya, Mousumi Akter, Yuta Yamasaki, Yoshiyuki Kageyama, Kazuki Sada, Akinori Kuzuya, Akira Kakugo

Small· Volume 21· Issue 26

Abstract

Abstract The assembly of biological systems forms nonequilibrium patterns with different functionalities through molecular‐level communication via stepwise sequential interaction and activation. The mimicking of this molecular signaling offers extensive opportunities to design self‐assemblies of bioinspired synthetic nonequilibrium systems to develop molecular robots with active, adaptive, and autonomous behavior. Herein, the design and construction of biomolecular motor system, microtubule (MT)‐kinesin based molecular swarm system, are reported through stepwise sequential interactions of DNA. DNA signals are exchanged between three different DNA‐tethered MTs, whereby the DNA signal from the first MT can activate the DNA strand on the second MT by communicating through physical contact, which facilitates assembly formation between the second and third DNA‐tethered MTs. The DNA strands on the MTs can recognize the specific sequences of other DNA strands in the system and communicate with the complementary DNA on other MTs. This work will pave the way for developing autonomous molecular machines with advanced functionalities for complex nanotechnological applications.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Micro and Nano Robotics · Molecular Communication and Nanonetworks · Advanced biosensing and bioanalysis techniques

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Department of Cell and Developmental Biology University of Michigan Medical School Ann Arbor MI 48109 USA

Department of Mechanical Engineering University of Michigan Ann Arbor MI 48108 USA

Department of Chemistry and Materials Engineering Kansai University Osaka 564‐8680 Japan

Graduate School of Chemical Sciences and Engineering Hokkaido University Sapporo 060‐0810 Japan

Faculty of Science Hokkaido University Sapporo 060‐0810 Japan

Department of Physics Kyoto University Kyoto 606‐8224 Japan

Funding

Japan Society for the Promotion of Science

References (63)

Show source-provided references
1. 10.1126/science.107082110.1126/science.1070821 ↗
2. 10.1073/pnas.08206589910.1073/pnas.082065899 ↗
3. 10.1021/acs.biomac.5b0168410.1021/acs.biomac.5b01684 ↗
4. 10.1039/C5SM02042E10.1039/C5SM02042E ↗
5. 10.1002/anie.19961154110.1002/anie.199611541 ↗
6. 10.1002/wnan.123810.1002/wnan.1238 ↗
7. 10.1007/s41061-020-0297-510.1007/s41061-020-0297-5 ↗
8. 10.1038/s41557-019-0251-810.1038/s41557-019-0251-8 ↗
9. 10.1039/C6CS00738D10.1039/C6CS00738D ↗
10. 10.1021/acs.accounts.5b0002510.1021/acs.accounts.5b00025 ↗
11. 10.1126/science.125429510.1126/science.1254295 ↗
12. 10.1007/s12213-015-0083-610.1007/s12213-015-0083-6 ↗
13. 10.1038/nnano.2011.18710.1038/nnano.2011.187 ↗
14. 10.1039/C9CS00877B10.1039/C9CS00877B ↗
15. 10.1126/scirobotics.aav800610.1126/scirobotics.aav8006 ↗
16. 10.1038/nmat308310.1038/nmat3083 ↗
17. 10.1002/adma.20090064010.1002/adma.200900640 ↗
18. 10.1140/epjst/e2013-02065-010.1140/epjst/e2013-02065-0 ↗
19. 10.1126/science.123002010.1126/science.1230020 ↗
20. 10.1063/1.507986110.1063/1.5079861 ↗
21. 10.1002/adma.20170675010.1002/adma.201706750 ↗
22. 10.1126/scirobotics.abd282310.1126/scirobotics.abd2823 ↗
23. 10.1038/nnano.2016.18710.1038/nnano.2016.187 ↗
24. 10.1021/nl047842710.1021/nl0478427 ↗
25. 10.1039/c1sm05413a10.1039/c1sm05413a ↗
26. 10.1039/c3sm50506e10.1039/c3sm50506e ↗
27. 10.1021/acsnano.9b0145010.1021/acsnano.9b01450 ↗
28. 10.1039/C5AN02377G10.1039/C5AN02377G ↗
29. 10.1038/s41467-017-02778-510.1038/s41467-017-02778-5 ↗
30. 10.1126/sciadv.adn449010.1126/sciadv.adn4490 ↗
31. 10.1126/sciadv.aaw059010.1126/sciadv.aaw0590 ↗
32. 10.1126/science.120052010.1126/science.1200520 ↗
33. 10.1038/s41467-018-06218-w10.1038/s41467-018-06218-w ↗
34. 10.1103/PhysRevLett.94.05830210.1103/PhysRevLett.94.058302 ↗
35. 10.1038/s41467-017-00070-010.1038/s41467-017-00070-0 ↗
36. 10.1038/nnano.2016.29910.1038/nnano.2016.299 ↗
37. 10.1038/nature1088910.1038/nature10889 ↗
38. 10.1038/s41467-020-17479-910.1038/s41467-020-17479-9 ↗
39. 10.1021/ar400318d10.1021/ar400318d ↗
40. 10.1126/scirobotics.abm067710.1126/scirobotics.abm0677 ↗
41. 10.1080/14686996.2020.176176110.1080/14686996.2020.1761761 ↗
42. 10.1038/s41467-021-24675-810.1038/s41467-021-24675-8 ↗
43. 10.1073/pnas.171278811510.1073/pnas.1712788115 ↗
44. 10.1038/s41570-019-0122-210.1038/s41570-019-0122-2 ↗
45. 10.1021/acscentsci.0c0006410.1021/acscentsci.0c00064 ↗
46. Volpe G. · arXiv preprint arXiv · 2024 · 2407
47. 10.1021/jacs.5b1191810.1021/jacs.5b11918 ↗
48. 10.1021/acs.chemrev.0c0029410.1021/acs.chemrev.0c00294 ↗
49. 10.1016/S0734-9750(97)00003-710.1016/S0734-9750(97)00003-7 ↗
50. 10.3390/s11060575410.3390/s110605754 ↗
51. 10.1002/smll.20220225310.1002/smll.202202253 ↗
52. 10.3390/bios1405023610.3390/bios14050236 ↗
53. 10.1073/pnas.090938010710.1073/pnas.0909380107 ↗
54. 10.1021/acsomega.4c0321610.1021/acsomega.4c03216 ↗
55. 10.1021/acs.chemrev.9b0024910.1021/acs.chemrev.9b00249 ↗
56. Ishii S. · 2022 · 3
57. 10.1016/S0092-8674(00)80360-810.1016/S0092-8674(00)80360-8 ↗
58. 10.1038/nmeth0405-29910.1038/nmeth0405-299 ↗
59. 10.1039/D0CC03124K10.1039/D0CC03124K ↗
60. 10.1038/srep1722210.1038/srep17222 ↗
61. 10.1021/bi060856210.1021/bi0608562 ↗
62. 10.1021/bi972742j10.1021/bi972742j ↗
63. 10.1021/la202467f10.1021/la202467f ↗