journal article·2023-01Open access

Solid Phase Synthesis of DNA Nanostructures in Heavy Liquid

Ioanna Smyrlaki, Alan Shaw, Yunshi Yang, Boxuan Shen, Björn Högberg

Small· Volume 19· Issue 4

Abstract

Abstract Introduction of the solid phase method to synthesize biopolymers has revolutionized the field of biological research by enabling efficient production of peptides and oligonucleotides. One of the advantages of this method is the ease of removal of excess production materials from the desired product, as it is immobilized on solid substrate. The DNA origami method utilizes the nature of nucleotide base‐pairing to construct well‐defined objects at the nanoscale, and has become a potent tool for manipulating matter in the fields of chemistry, physics, and biology. Here, the development of an approach to synthesize DNA nanostructures directly on magnetic beads, where the reaction is performed in heavy liquid to maintain the beads in suspension is reported. It is demonstrated that the method can achieve high folding yields of up to 90% for various DNA shapes, comparable to standard folding. At the same time, this establishes an easy, fast, and efficient way to further functionalize the DNA origami in one‐pot, as well as providing a built‐in purification method for easy removal of excess by‐products such as non‐integrated DNA strands and residual functionalization molecules.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Advanced biosensing and bioanalysis techniques · RNA Interference and Gene Delivery · Bacteriophages and microbial interactions

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Department of Medical Biochemistry and Biophysics Karolinska Institutet Stockholm 17177 Sweden

Biohybrid Materials Department of Bioproducts and Biosystems Aalto University School of Chemical Engineering P.O. Box 16100 Aalto 00076 Finland

Funding

Luonnontieteiden ja Tekniikan Tutkimuksen Toimikunta · Vetenskapsrådet · H2020 European Research Council · Knut och Alice Wallenbergs Stiftelse

References (29)

Show source-provided references
1. 10.1038/350631a010.1038/350631a0 ↗
2. 10.1038/nature0458610.1038/nature04586 ↗
3. 10.1038/nature0801610.1038/nature08016 ↗
4. 10.1093/nar/gkp43610.1093/nar/gkp436 ↗
5. 10.1021/ja906381y10.1021/ja906381y ↗
6. 10.1126/science.117425110.1126/science.1174251 ↗
7. 10.1038/nature1458610.1038/nature14586 ↗
8. 10.1126/science.aaf438810.1126/science.aaf4388 ↗
9. 10.1038/nmeth0311-19210.1038/nmeth0311-192 ↗
10. 10.1038/nmeth.302510.1038/nmeth.3025 ↗
11. 10.1002/anie.20140599110.1002/anie.201405991 ↗
12. 10.1021/nn507035g10.1021/nn507035g ↗
13. 10.1002/cbic.20170037710.1002/cbic.201700377 ↗
14. 10.1038/s41467-018-03313-w10.1038/s41467-018-03313-w ↗
15. A.Angelin S.Weigel R.Garrecht R.Meyer J.Bauer R. K.Kumar M.Hirtz C. M.Niemeyer 2015 54 15813.10.1002/anie.201509772 ↗
16. 10.1021/acsnano.0c1010410.1021/acsnano.0c10104 ↗
17. 10.1021/acsnano.0c1063210.1021/acsnano.0c10632 ↗
18. 10.1002/anie.20170676510.1002/anie.201706765 ↗
19. 10.1021/jacs.1c0229810.1021/jacs.1c02298 ↗
20. 10.3390/nano903033910.3390/nano9030339 ↗
21. 10.1002/chem.20180550610.1002/chem.201805506 ↗
22. 10.1021/ja00897a02510.1021/ja00897a025 ↗
23. 10.1038/3502052410.1038/35020524 ↗
24. 10.1038/nchem.95710.1038/nchem.957 ↗
25. 10.1038/ncomms209510.1038/ncomms2095 ↗
26. 10.1002/smll.20200721810.1002/smll.202007218 ↗
27. 10.1038/s41557-020-0539-810.1038/s41557-020-0539-8 ↗
28. 10.1038/s41467-021-21755-710.1038/s41467-021-21755-7 ↗
29. 10.1038/s41563-021-01020-410.1038/s41563-021-01020-4 ↗