journal article·2018-08

RETRACTED: Shrinkable Nanotubes for Duplex Formation of Short Nucleotides

Naohiro Kameta, Haruhisa Akiyama

Small· Volume 14· Issue 34
This record is marked as retracted by the source. Review the publisher’s notice before using its findings.
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Abstract

Abstract Molecular monolayer nanotubes produced by self‐assembly of an amphiphile modified with a 2‐nitrobenzyl group as a photoresponsive unit are able to encapsulate dinucleotides via electrostatic attraction. Upon photoirradiation, the 18 nm inner diameter of the nanotubes shrinks to less than 2 nm as a result of photochemical cleavage of the 2‐nitrobenzyl group in the amphiphile. This shrinking of the nanotube channels leads to a propulsive release of the dinucleotides into the bulk solution and simultaneously accelerates formation of the dinucleotide duplexes. The larger nanotube channels without photoirradiation merely release each dinucleotide into the bulk solution, indicating that the squeezing via transportation in the narrow nanotube channels is necessary for duplex formation. In addition to the size effect, water with a lower polarity confined within the narrow nanotube channels helps to stabilize the energetically unfavorable hydrogen‐bonded base pair between the dinucleotides. This system should enable researchers to perform biological reactions that occur only in specific environments and conditions in living organisms.
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Research context

OpenAlex topics: Supramolecular Self-Assembly in Materials · Advanced biosensing and bioanalysis techniques · DNA and Nucleic Acid Chemistry

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Department of Materials and Chemistry Nanomaterials Research Institute National Institute of Advanced Industrial Science and Technology (AIST) Tsukuba Central 5, 1‐1‐1 Higashi Tsukuba Ibaraki 305‐8565 Japan

Department of Materials and Chemistry Research Institute for Sustainable Chemistry AIST Tsukuba Central 5, 1‐1‐1 Higashi Tsukuba Ibaraki 305‐8565 Japan

Funding

Japan Society for the Promotion of Science

References (45)

Show source-provided references
1. 10.1007/978-1-4612-5190-310.1007/978-1-4612-5190-3 ↗
2. 10.1002/anie.19961154110.1002/anie.199611541 ↗
3. 10.1146/annurev.biophys.37.032807.12581710.1146/annurev.biophys.37.032807.125817 ↗
4. 10.1016/j.biochi.2008.02.00910.1016/j.biochi.2008.02.009 ↗
5. 10.1002/anie.20060119010.1002/anie.200601190 ↗
6. 10.1039/b717478k10.1039/b717478k ↗
7. 10.1038/nchem.10010.1038/nchem.100 ↗
8. 10.1038/ncomms615110.1038/ncomms6151 ↗
9. 10.1126/science.120596210.1126/science.1205962 ↗
10. 10.1039/C4CS00164H10.1039/C4CS00164H ↗
11. 10.1002/anie.20131000610.1002/anie.201310006 ↗
12. 10.1039/C6RA16315G10.1039/C6RA16315G ↗
13. 10.1002/chem.20170072710.1002/chem.201700727 ↗
14. 10.1246/bcsj.2017042410.1246/bcsj.20170424 ↗
15. 10.1039/C5AN02655E10.1039/C5AN02655E ↗
16. 10.1002/adbi.20170021410.1002/adbi.201700214 ↗
17. 10.1021/nn301041y10.1021/nn301041y ↗
18. 10.1002/chem.20150461310.1002/chem.201504613 ↗
19. 10.1039/C6RA06793J10.1039/C6RA06793J ↗
20. 10.1021/acsomega.7b0083810.1021/acsomega.7b00838 ↗
21. 10.1002/smll.20180003010.1002/smll.201800030 ↗
22. 10.1002/chem.20110017910.1002/chem.201100179 ↗
23. 10.1126/science.337.6091.15210.1126/science.337.6091.152 ↗
24. 10.1038/ncomms965010.1038/ncomms9650 ↗
25. 10.1002/chem.20150043010.1002/chem.201500430 ↗
26. 10.1039/C2TB00101B10.1039/C2TB00101B ↗
27. 10.1021/acs.langmuir.6b0163210.1021/acs.langmuir.6b01632 ↗
28. 10.1039/C7CP03905K10.1039/C7CP03905K ↗
29. 10.1016/S0014-5793(02)03000-410.1016/S0014-5793(02)03000-4 ↗
30. 10.1038/176780a010.1038/176780a0 ↗
31. 10.1021/ja970844r10.1021/ja970844r ↗
32. Garti N. · 1988 · 139
33. 10.1039/p2996000270710.1039/p29960002707 ↗
34. 10.1021/cr030072j10.1021/cr030072j ↗
35. 10.1021/cm070626p10.1021/cm070626p ↗
36. 10.1039/C5CC08035E10.1039/C5CC08035E ↗
37. 10.1021/ja711213s10.1021/ja711213s ↗
38. 10.1002/anie.20090152410.1002/anie.200901524 ↗
39. 10.1039/c0cc02920c10.1039/c0cc02920c ↗
40. 10.1039/c3cs60148j10.1039/c3cs60148j ↗
41. 10.1039/C5CP05238F10.1039/C5CP05238F ↗
42. 10.1002/cphc.20080061610.1002/cphc.200800616 ↗
43. 10.1021/jz900312510.1021/jz9003125 ↗
44. 10.1039/c1cp21458f10.1039/c1cp21458f ↗
45. 10.2116/analsci.28.106510.2116/analsci.28.1065 ↗