journal article·2024-03Open access

A Blood Drying Process for DNA Amplification

Jongwon Lim, Shuaizhen Zhou, Janice Baek, Alicia Yeaeun Kim, Enrique Valera, Jonathan Sweedler, Rashid Bashir

Small· Volume 20· Issue 11

Abstract

Abstract The presence of numerous inhibitors in blood makes their use in nucleic acid amplification techniques difficult. Current methods for extracting and purifying pathogenic DNA from blood involve removal of inhibitors, resulting in low and inconsistent DNA recovery rates. To address this issue, a biphasic method is developed that simultaneously achieves inhibitor inactivation and DNA amplification without the need for a purification step. Inhibitors are physically trapped in the solid‐phase dried blood matrix by blood drying, while amplification reagents can move into the solid nano‐porous dried blood and initiate the amplification. It is demonstrated that the biphasic method has significant improvement in detection limits for bacteria such as Escherichia coli, Methicillin‐resistant Staphylococcus aureus, Methicillin‐Sensitive Staphylococcus aureus using loop‐mediated isothermal amplification (LAMP) and recombinase polymerase amplification (RPA). Several factors, such as drying time, sample volume, and material properties are characterized to increase sensitivity and expand the application of the biphasic assay to blood diagnostics. With further automation, this biphasic technique has the potential to be used as a diagnostic platform for the detection of pathogens eliminating lengthy culture steps.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Biosensors and Analytical Detection · Advanced biosensing and bioanalysis techniques · SARS-CoV-2 detection and testing

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Nick Holonyak Jr. Micro and Nanotechnology Laboratory University of Illinois at Urbana−Champaign Urbana IL 61801 USA

Department of Bioengineering University of Illinois at Urbana−Champaign Urbana IL 61801 USA

Department of Energy Center for Advanced Bioenergy and Bioproducts Innovation University of Illinois at Urbana‐Champaign Urbana IL 61801 USA

Carl R. Woese Institute for Genomic Biology University of Illinois at Urbana‐Champaign Urbana IL 61801 USA

Department of Materials Science and Engineering University of Illinois at Urbana−Champaign Urbana IL 61801 USA

Department of Chemistry University of Illinois at Urbana−Champaign Urbana IL 61801 USA

Department of Biomedical and Translational Science Carle Illinois College of Medicine University of Illinois at Urbana−Champaign Urbana IL 61801 USA

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