journal article·2024-05Open access

A Spatially Controlled Proximity Split Tweezer Switch for Enhanced DNA Circuit Construction and Multifunctional Transduction

Dan Bai, Jianhong Zhang, Yaoyi Zhang, Hongyan Yu, Li Zhang, Xiaole Han, Ke Lv, Li Wang, Wang Luo, You Wu, Xi Zhou, Weitao Wang, Tong Feng, Guoming Xie

Small· Volume 20· Issue 18

Abstract

Abstract DNA strand displacement reactions are vital for constructing intricate nucleic acid circuits, owing to their programmability and predictability. However, the scarcity of effective methods for eliminating circuit leakages has hampered the construction of circuits with increased complexity. Herein, a versatile strategy is developed that relies on a spatially controlled proximity split tweezer (PST) switch to transduce the biomolecular signals into the independent oligonucleotides. Leveraging the double‐stranded rigidity of the tweezer works synergistically with the hindering effect of the hairpin lock, effectively minimizing circuit leakage compared with sequence‐level methods. In addition, the freely designed output strand is independent of the target binding sequence, allowing the PST switch conformation to be modulated by nucleic acids, small molecules, and proteins, exhibiting remarkable adaptability to a wide range of targets. Using this platform, established logical operations between different types of targets for multifunctional transduction are successfully established. Most importantly, the platform can be directly coupled with DNA catalytic circuits to further enhance transduction performance. The uniqueness of this platform lies in its design straightforwardness, flexibility, scalable intricacy, and system compatibility. These attributes pave a broad path toward nucleic acid‐based development of sophisticated transduction networks, making them widely applied in basic science research and biomedical applications.
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Research context

OpenAlex topics: Advanced biosensing and bioanalysis techniques · RNA Interference and Gene Delivery · DNA and Nucleic Acid Chemistry

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Key Laboratory of Clinical Laboratory Diagnostics (Chinese Ministry of Education) College of Laboratory Medicine Chongqing Medical Laboratory Microfluidics and SPRi Engineering Research Center Chongqing Medical University No. 1 Yi Xue Yuan Road Chongqing 400016 P. R. China

Clinical Laboratories The First Affiliated Hospital of Chongqing Medical University Chongqing 400016 P. R. China

Department of Forensic Chongqing Medical University Chongqing 400016 P. R. China

Department of Neurosurgery The First Affiliated Hospital of Chongqing Medical University Chongqing 40016 P. R. China

The Center for Clinical Molecular Medical Detection The First Affiliated Hospital of Chongqing Medical University Chongqing 400016 P.R. China

Funding

National Natural Science Foundation of China · Key Technologies Research and Development Program

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