journal article·2022-11-07

Machine Learning Assisted Graphdiyne-Based Nanozyme Discovery

Yixin Yu, Yujie Jiang, Chaohui Zhang, Qiang Bai, Fengyue Fu, Siheng Li, Lina Wang, William W. Yu, Ning Sui, Zhiling Zhu

ACS Materials Letters· Volume 4· Issue 11
Publisher page

Abstract

Improving the catalytic activity and broadening the scope of nanozymes are prerequisites to supplement or even supersede natural enzymes. However, the discovery of nanozymes is mostly relied on serendipity with limited fine-tunings of chemical composition, which is often incomprehensive and fragmented. Machine learning (ML) is a promising solution to predict the nanozyme performance and thus accelerate the nanozyme development. Herein, a thorough investigation of the peroxidase (POD) mimic reaction catalyzed by nonmetal atom doped graphdiyne (GDY) is presented and two doped GDYs (B-GDY and N-GDY) with best performance were screened out. Specifically, the extreme gradient boosting (XGB) algorithm can mine the connection between the model parameters and maximum energy barrier (R2 > 78%) or maximum energy consuming step (accuracy > 65%) from the data set constructed by all the nonmetal atom doped GDYs, which provides a method to effectively reduce 20% calculations. In addition, six nonmetal atom doped GDYs with different expected properties were synthesized, and their activity trends in three related experiments were consistent with the predicted results. This study demonstrates that ML can be a useful tool to assist density functional theory (DFT) computational screening and can serve as a guide for optimizing nanozyme performance, depending on doping strategy.
Source: openalex_inverted_index · Quality: baseline

Research context

OpenAlex topics: Advanced Nanomaterials in Catalysis · Nanocluster Synthesis and Applications · Advanced biosensing and bioanalysis techniques

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

College of Materials Science and Engineering, Qingdao University of Science and Technology, 53 Zhengzhou Road, Qingdao, Shandong 266042, China

College of Environment and Safety Engineering, Qingdao University of Science and Technology, 53 Zhengzhou Road, Qingdao, Shandong 266042, China

Department of Chemistry, University of Houston, 4800 Calhoun Road, Houston, Texas 77204, United States

School of Chemistry and Chemical Engineering, Shandong University, 27 South Shanda Road, Jinan, Shandong 250100, China

Funding

National Natural Science Foundation of China · Natural Science Foundation of Shandong Province

References (35)

Show source-provided references
1. 10.1016/j.nantod.2021.10126910.1016/j.nantod.2021.101269 ↗
2. 10.1039/C8CS00457A10.1039/C8CS00457A ↗
3. 10.1016/j.mattod.2020.08.02010.1016/j.mattod.2020.08.020 ↗
4. 10.1016/j.trac.2021.11637910.1016/j.trac.2021.116379 ↗
5. 10.1016/S1872-2040(21)60092-010.1016/S1872-2040(21)60092-0 ↗
6. 10.1039/D1TB02667D10.1039/D1TB02667D ↗
7. Meng Y. · Environ. Sci. Nano · 2020 · 7 · 130510.1039/C9EN01089K ↗
8. 10.1039/C8CS00718G10.1039/C8CS00718G ↗
9. 10.1039/D0CS00659A10.1039/D0CS00659A ↗
10. 10.1016/j.ccr.2021.21417010.1016/j.ccr.2021.214170 ↗
11. 10.1038/s41929-018-0056-y10.1038/s41929-018-0056-y ↗
12. 10.1021/acscatal.9b0418610.1021/acscatal.9b04186 ↗
13. 10.1021/acscatal.0c0347210.1021/acscatal.0c03472 ↗
14. 10.1021/jacs.8b1387910.1021/jacs.8b13879 ↗
15. 10.1021/acs.chemrev.1c0010710.1021/acs.chemrev.1c00107 ↗
16. 10.1039/C9CS00786E10.1039/C9CS00786E ↗
17. 10.1002/anie.20200836610.1002/anie.202008366 ↗
18. 10.1038/s41557-021-00716-z10.1038/s41557-021-00716-z ↗
19. 10.1038/s41578-021-00337-510.1038/s41578-021-00337-5 ↗
20. 10.1038/s41586-018-0337-210.1038/s41586-018-0337-2 ↗
21. 10.1002/adfm.20210804410.1002/adfm.202108044 ↗
22. 10.1021/acs.chemrev.0c0000410.1021/acs.chemrev.0c00004 ↗
23. 10.1021/jacs.0c0910510.1021/jacs.0c09105 ↗
24. 10.1002/adfm.20210419510.1002/adfm.202104195 ↗
25. 10.1039/C9TA02356A10.1039/C9TA02356A ↗
26. 10.1002/aenm.20190324210.1002/aenm.201903242 ↗
27. 10.1002/smll.20210567310.1002/smll.202105673 ↗
28. 10.1002/adma.20220173610.1002/adma.202201736 ↗
29. 10.1039/b922733d10.1039/b922733d ↗
30. 10.1039/c3cs60388a10.1039/c3cs60388a ↗
31. 10.1007/s12274-021-3685-410.1007/s12274-021-3685-4 ↗
32. 10.1016/j.jcis.2021.09.00610.1016/j.jcis.2021.09.006 ↗
33. 10.1039/D0CC01840F10.1039/D0CC01840F ↗
34. 10.1016/j.cej.2020.12753710.1016/j.cej.2020.127537 ↗
35. 10.1016/j.nantod.2022.10142910.1016/j.nantod.2022.101429 ↗