journal article·2020-08-14

Essential Step Toward Mining Big Polymer Data: PolyName2Structure, Mapping Polymer Names to Structures

Chieh Lin, Pei-Hua Wang, Yi Hsiao, Yi-Tsu Chan, Amanda C. Engler, Jed W. Pitera, Daniel P. Sanders, Joy Cheng, Yufeng J. Tseng

ACS Applied Polymer Materials· Volume 2· Issue 8
Publisher page

Abstract

Advances in polymer science have made polymers essential in our everyday life and have yielded unprecedented quantities of data over the past several decades. However, it is still challenging and inefficient to organize such scattered and accumulated “big data” in a text format through mass journals, patents, and web pages due to the complexity and ambiguity of polymer representations. In this paper, we report the first automated framework, PolyName2Structure (PN2S), which is able to convert various polymer name representations to their corresponding polymer structures. In PN2S, machine learning models were built to predict the polymerization pathway, identify the reacting group(s), and generate repeating units after polymerization. This PN2S system achieved over 90% accuracy when applied to polymer names listed in a commercial catalog, embodying the first step toward resolving the complexity of the data structure for polymers by building a practical model that enables text mining of structural polymer information.
Source: openalex_inverted_index · Quality: baseline

Research context

OpenAlex topics: Computational Drug Discovery Methods · Machine Learning in Materials Science · Biomedical Text Mining and Ontologies

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Department of Computer Science and Information Engineering, National Taiwan University, No.1 Sec.4, Roosevelt Road, Taipei 106, Taiwan

Graduate Institute of Biomedical Electronics and Bioinformatics, National Taiwan University, No.1 Sec.4, Roosevelt Road, Taipei 106, Taiwan

Department of Chemistry, National Taiwan University, No.1 Sec.4, Roosevelt Road, Taipei 106, Taiwan

IBM Almaden Research Center, 650 Harry Rd, San Jose, California 95120, United States

Advanced Materials Center, Nano Patterning Technology Division, Taiwan Semiconductor Manufacturing Company, 168 Park Ave, 2, Hsinchu Science Park, Hsinchu 300, Taiwan

Funding

National Taiwan University · Ministry of Science and Technology, Taiwan

References (23)

Show source-provided references
1. 10.1038/nrg333710.1038/nrg3337 ↗
2. 10.1016/j.drudis.2013.09.01210.1016/j.drudis.2013.09.012 ↗
3. Adams N. · 2010 · 10710.1007/12_2009_18 ↗
4. 10.1002/marc.20070083210.1002/marc.200700832 ↗
5. Kratochvil P. · Pure Appl. Chem. · 1996 · 68 · 228710.1351/pac199668122287 ↗
6. 10.1016/S0079-6700(00)00007-110.1016/S0079-6700(00)00007-1 ↗
7. Polymer Science | Sigma-Aldrich https://www.sigmaaldrich.com/materials-science/polymer-science.html (accessed Jan 8, 2020).
8. 10.1021/ci100384d10.1021/ci100384d ↗
9. Otsuka S. · 2011 · 2210.1109/EIDWT.2011.13 ↗
10. Is C5.0 Better Than C4.5? https://rulequest.com/see5-comparison.html (accessed Jan 8, 2020).
11. C5.0: An Informal Tutorial https://www.rulequest.com/see5-unix.html (accessed Jan 8, 2020).
12. Quinkan J. R. · 1993
13. Information on See5/C5.0 https://www.rulequest.com/see5-info.html (accessed Jan 8, 2020).
14. Freund Y. · 1996 · 96 · 148
15. Overview (JChem Base API documentation (c) 1998-2019 ChemAxon Ltd.) https://apidocs.chemaxon.com/jchem/doc/dev/java/api/ (accessed Jan 8, 2020).
16. 10.1039/C7CS00460E10.1039/C7CS00460E ↗
17. 10.1021/acsmacrolett.7b0022810.1021/acsmacrolett.7b00228 ↗
18. 10.1021/cr200066h10.1021/cr200066h ↗
19. 10.1016/j.cossms.2014.02.00310.1016/j.cossms.2014.02.003 ↗
20. Warren, J. A.; Boisvert, R. F. Workshop Report: Building the Materials Innovation Infrastructure: Data and Standards A Materials Genome Initiative Workshop; 2012.10.6028/NIST.IR.7898 ↗
21. 10.1021/acscentsci.7b0006410.1021/acscentsci.7b00064 ↗
22. 10.1039/C8SC04228D10.1039/C8SC04228D ↗
23. 10.1021/acscentsci.9b0047610.1021/acscentsci.9b00476 ↗