Taxonomy for engineered living materials
Source abstract
Abstract
Engineered living materials (ELMs) are the most relevant contemporary revolution in materials science and engineering and aim to outperform current examples of “smart,” active, or multifunctional materials, enabling countless industrial and societal applications. The “living” materials facilitate unique properties, including autonomy, intelligent responses, self-repair, and even self-replication. Within this dawning field, current literature has classified ELMs mainly into biological ELMs (bio-ELMs), which are solely made of cells, and hybrid living materials (HLMs), consisting of abiotic scaffold and living cells. Considering that the most relevant feature of ELMs is the living cell colonies or micro-organisms, we consider that ELMs should be classified and presented differently, more related to life taxonomies than to materials science disciplines. Toward solving the current need for the classification of ELMs, this study presents the first complete proposal of taxonomy for these ELMs. Here, life taxonomies and materials classifications are hybridized hierarchically. Once the proposed taxonomy is explained, its applicability is illustrated by classifying several examples of bio-ELMs and HLMs, and its utility for guiding research in this field is analyzed. Finally, possible modifications and improvements are discussed, and a call for collaboration is launched for progressing in this complex and multidisciplinary field.
Source: openalex_inverted_index · Quality: baseline
Research context
OpenAlex topics: Modular Robots and Swarm Intelligence · 3D Printing in Biomedical Research · Planarian Biology and Electrostimulation
SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.
References (100+)
Show source-provided references
1. Linné · 1748
2. On the relationship between taxonomy and evolution10.2307/1218675 ↗
3. Kingdom protozoa and its 18 phyla10.1128/mr.57.4.953-994.1993 ↗
4. Taxonomy in evolutionary perspective
5. International code of phylogenetic nomenclature (PhyloCode)
6. Théorie Physico-chimique de la Vie et Générations Spontanées10.1038/086410a0 ↗
7. Rational programming of history-dependent logic in cellular populations10.1038/s41467-020-18455-z ↗
8. Rational design and optimization of synthetic gene switches for controlling cell-fate decisions in pluripotent stem cells10.1016/j.ymben.2021.03.009 ↗
9. 2018
10. Engineered living materials: prospects and challenges for using biological systems to direct the assembly of smart materials10.1002/adma.201704847 ↗
11. Recent advances in the synthesis of functional materials by engineered and recombinant living cells10.1039/C7SM01000A ↗
12. EIC Pathfinder challenge: engineered living materials
13. Engineered living materials-based sensing and actuation10.3389/fsens.2020.586300 ↗
14. Stimuli-responsive engineered living materials10.1039/D0SM01905D ↗
15. Engineered living biomaterials10.1038/s41578-021-00350-8 ↗
16. Synthetic biology engineering of biofilms as nanomaterials factories10.1042/BST20160348 ↗
17. Bacterial cellulose spheroids as building blocks for 3D and patterned living materials and for regeneration10.1038/s41467-021-25350-8 ↗
18. Bioinspired soft robotic caterpillar with cardiomyocyte drivers10.1002/adfm.201907820 ↗
19. Engineered living materials: taxonomies and emerging trends10.1016/j.tibtech.2020.10.009 ↗
20. Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya10.1073/pnas.87.12.4576 ↗
21. The synergy of scaffold-based and scaffold-free tissue engineering strategies10.1016/j.tibtech.2018.01.005 ↗
22. 4D printing applications in medical field: a brief review10.1016/j.cegh.2018.09.007 ↗
23. Developments in 4D-printing: a review on current smart materials, technologies, and applications10.1080/19475411.2019.1591541 ↗
24. Bacterial biofilms on gold grains—implications for geomicrobial transformations of gold10.1093/femsec/fiw082 ↗
25. Biofabrication of discrete spherical gold nanoparticles using the metal-reducing bacterium Shewanella oneidensis10.1016/j.actbio.2011.01.023 ↗
26. Biofabrication of silver nanoparticles using bacteria from mangrove swamp10.1049/iet-nbt.2017.0205 ↗
27. State-of-the-art review of biocementation by microbially induced calcite precipitation (MICP) for soil stabilization10.1080/01490451.2016.1225866 ↗
28. Archaeal production of polyhydroxyalkanoate (PHA) Co- and terpolyesters from biodiesel industry-derived by-products10.1155/2013/129268 ↗
29. Flagella of pyrococcus furiosus : multifunctional organelles, made for swimming, adhesion to various surfaces, and cell-cell contacts10.1128/JB.00527-06 ↗
30. The multicellular morphotypes of Salmonella typhimurium and Escherichia coli produce cellulose as the second component of the extracellular matrix10.1046/j.1365-2958.2001.02337.x ↗
31. Engineering control of bacterial cellulose production using a genetic toolkit and a new cellulose-producing strain10.1073/pnas.1522985113 ↗
32. Programmable and printable Bacillus subtilis biofilms as engineered living materials10.1038/s41589-018-0169-2 ↗
33. Genetically programmable self-regenerating bacterial hydrogels10.1002/adma.201901826 ↗
34. Engineered E. coli Nissle 1917 for the delivery of matrix-tethered therapeutic domains to the gut10.1038/s41467-019-13336-6 ↗
35. Engineered catalytic biofilms: site-specific enzyme immobilization onto E. coli curli nanofibers10.1002/bit.25638 ↗
36. Engineering high-yield biopolymer secretion creates an extracellular protein matrix for living materials10.1128/msystems.00903-20 ↗
37. Bacterial synthesis of biodegradable polyhydroxyalkanoates10.1111/j.1365-2672.2007.03335.x ↗
38. Biosynthesis of polyhydroxyalkanoates containing hydroxyl group from glycolate in Escherichia coli10.1186/s13568-016-0200-5 ↗
39. Robust self-regeneratable stiff living materials fabricated from microbial cells10.1002/adfm.202010784 ↗
40. Immobilization of functional nano-objects in living engineered bacterial biofilms for catalytic applications10.1093/nsr/nwz104 ↗
41. Synthesis and patterning of tunable multiscale materials with engineered cells10.1038/nmat3912 ↗
42. Biomineralization and successive regeneration of engineered living building materials10.1016/j.matt.2019.11.016 ↗
43. Growing living composites with ordered microstructures and exceptional mechanical properties10.1002/adma.202006946 ↗
44. Self-healing of cracked concrete: a bacterial approach
45. Stretchable living materials and devices with hydrogel–elastomer hybrids hosting programmed cells10.1073/pnas.1618307114 ↗
46. 3D printing of living responsive materials and devices10.1002/adma.201704821 ↗
47. Hybrid living materials: digital design and fabrication of 3D multimaterial structures with programmable biohybrid surfaces10.1002/adfm.201907401 ↗
48. Genetic control of radical cross-linking in a semisynthetic hydrogel10.1021/acsbiomaterials.9b01773 ↗
49. Optoregulated drug release from an engineered living hydrogel
50. Optoregulated protein release from an engineered living10.1002/adbi.201800312 ↗
51. A biosensing soft robot: autonomous parsing of chemical signals through integrated organic and inorganic interfaces10.1126/scirobotics.aax0765 ↗
52. Harnessing the hygroscopic and biofluorescent behaviors of genetically tractable microbial cells to design biohybrid wearables10.1126/sciadv.1601984 ↗
53. A marine photosynthetic microbial cell factory as a platform for spider silk production10.1038/s42003-020-1099-6 ↗
54. Enhanced biodegradation of atrazine by bacteria encapsulated in organically modified silica gels10.1016/j.jcis.2017.09.044 ↗
55. Adsorption and biodegradation of aromatic chemicals by bacteria encapsulated in a hydrophobic silica gel10.1021/acsami.7b06791 ↗
56. Incorporation of penicillin-producing fungi into living materials to provide chemically active and antibiotic-releasing surfaces10.1002/anie.201204337 ↗
57. 3D bioprinting of cyanobacteria for solar-driven Bioelectricity generation in resource-limited environments
58. Bacillus spores as building blocks for stimuli-responsive materials and nanogenerators10.1038/nnano.2013.290 ↗
59. A dip-stick type biosensor using bioluminescent bacteria encapsulated in color-coded alginate microbeads for detection of water toxicity10.1039/C4AN00308J ↗
60. Bacteria encapsulated electrospun nanofibrous webs for remediation of methylene blue dye in water10.1016/j.colsurfb.2017.01.034 ↗
61. Nanofibrillar patches of commensal skin bacteria10.1021/acs.biomac.8b00735 ↗
62. Virus disinfection from environmental water sources using living engineered biofilm materials10.1002/advs.201903558 ↗
63. Live cyanobacteria produce photocurrent and hydrogen using both the respiratory and photosynthetic systems10.1038/s41467-018-04613-x ↗
64. Light-controlled, high-resolution patterning of living engineered bacteria onto textiles, ceramics, and plastic10.1002/adfm.201901788 ↗
65. Electrochemical biomemory devices based on self-assembled graphene–Shewanella oneidensis composite biofilms10.1039/c3ra42850h ↗
66. Highly active bidirectional electron transfer by a self-assembled electroactive reduced-graphene-oxide-hybridized biofilm10.1002/anie.201400463 ↗
67. Hybrid conducting biofilm with built-in bacteria for high-performance microbial fuel cells10.1002/celc.201402458 ↗
68. High-temperature spray-dried polymer/bacteria microparticles for electrospinning of composite nonwovens10.1002/mabi.201800356 ↗
69. Living composites of bacteria and polymers as biomimetic films for metal sequestration and bioremediation10.1002/mabi.201400538 ↗
70. Encapsulation of bacterial cells in cytoprotective ZIF-90 crystals as living composites10.1016/j.mtbio.2021.100097 ↗
71. Efficient bioremediation of radioactive iodine using biogenic gold nanomaterial-containing radiation-resistant bacterium, Deinococcus radiodurans R110.1039/C7CC00720E ↗
72. Microbe-engaged synthesis of carbon dot-decorated reduced graphene oxide as high-performance oxygen reduction catalysts10.1039/C6TA01662F ↗
73. Carbon fiber/microlattice 3D hybrid architecture as multi-scale scaffold for tissue engineering10.1016/j.msec.2021.112140 ↗
74. Natural polymers for the microencapsulation of cells10.1098/rsif.2014.0817 ↗
75. A self-propelled biohybrid swimmer at low Reynolds number10.1038/ncomms4081 ↗
76. Biohybrid robot with skeletal muscle tissue covered with a collagen structure for moving in air10.1063/1.5127204 ↗
77. Three-dimensionally printed biological machines powered by skeletal muscle10.1073/pnas.1401577111 ↗
78. Bioinspired living structural color hydrogels10.1126/scirobotics.aar8580 ↗
79. Encapsulation of cells within silica matrixes: towards a new advance in the conception of living hybrid materials10.1016/j.jcis.2009.10.050 ↗
80. Phototactic guidance of a tissue-engineered soft-robotic ray10.1126/science.aaf4292 ↗
81. Muscular thin films for building actuators and powering devices10.1126/science.1146885 ↗
82. A tissue-engineered jellyfish with biomimetic propulsion10.1038/nbt.2269 ↗
83. Muscle-powered cantilever for microtweezers with an artificial micro skeleton and rat primary myotubes10.1299/jbse.5.245 ↗
84. Instrumented cardiac microphysiological devices via multimaterial three-dimensional printing10.1038/nmat4782 ↗
85. When the material grows: a case study on designing (with) mycelium-based materials
86. Direct writing of tunable living inks for bioprocess intensification10.1021/acs.nanolett.9b00066 ↗
87. Using nature in architecture: building a living house with mycelium and trees10.1016/j.foar.2017.05.003 ↗
88. Microorganism inspired hydrogels: hierarchical super/macro-porous structure, rapid swelling rate and high adsorption10.1039/C4RA04243C ↗
89. 4D printing of engineered living materials10.1002/adfm.202106843 ↗
90. Fermentation based carbon nanotube multifunctional bionic composites10.1038/srep27031 ↗
91. Graphene-based bionic composites with multifunctional and repairing properties10.1021/acsami.6b02530 ↗
92. Silica-alginate-fungi biocomposites for remediation of polluted water10.1039/c0jm01144d ↗
93. Incorporating microorganisms into polymer layers provides bioinspired functional living materials10.1073/pnas.1115381109 ↗
94. Green bioprinting: fabrication of photosynthetic algae-laden hydrogel scaffolds for biotechnological and medical applications10.1002/elsc.201400205 ↗
95. Bionic 3D printed corals10.1038/s41467-020-15486-4 ↗
96. Bioprinting of regenerative photosynthetic living materials10.1002/adfm.202011162 ↗
97. Living systems: designing growth in Baubotanik
98. Green bioprinting: extrusion-based fabrication of plant cell-laden biopolymer hydrogel scaffolds10.1088/1758-5090/aa8854 ↗
99. Plant cell proliferation inside an inorganic host10.1016/j.jbiotec.2006.07.024 ↗
100. Dynamic self-assembly of compartmentalized DNA nanotubes10.1038/s41467-021-23850-1 ↗