journal article·2020-07-10Open access

A critical examination of compound stability predictions from machine-learned formation energies

Christopher J. Bartel, Amalie Trewartha, Qi Wang, Alexander Dunn, Anubhav Jain, Gerbrand Ceder

npj Computational Materials· Volume 6· Issue 1

Abstract

Abstract Machine learning has emerged as a novel tool for the efficient prediction of material properties, and claims have been made that machine-learned models for the formation energy of compounds can approach the accuracy of Density Functional Theory (DFT). The models tested in this work include five recently published compositional models, a baseline model using stoichiometry alone, and a structural model. By testing seven machine learning models for formation energy on stability predictions using the Materials Project database of DFT calculations for 85,014 unique chemical compositions, we show that while formation energies can indeed be predicted well, all compositional models perform poorly on predicting the stability of compounds, making them considerably less useful than DFT for the discovery and design of new solids. Most critically, in sparse chemical spaces where few stoichiometries have stable compounds, only the structural model is capable of efficiently detecting which materials are stable. The nonincremental improvement of structural models compared with compositional models is noteworthy and encourages the use of structural models for materials discovery, with the constraint that for any new composition, the ground-state structure is not known a priori. This work demonstrates that accurate predictions of formation energy do not imply accurate predictions of stability, emphasizing the importance of assessing model performance on stability predictions, for which we provide a set of publicly available tests.
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Research context

OpenAlex topics: Machine Learning in Materials Science · X-ray Diffraction in Crystallography · Inorganic Chemistry and Materials

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References (51)

Show source-provided references
1. Himanen, L., Geurts, A., Foster, A. S. & Rinke, P. Data-driven materials science: status, challenges, and perspectives. Adv. Sci. 0, 1900808 (2019).10.1002/advs.201900808 ↗
2. Schleder, G. R., Padilha, A. C. M., Acosta, C. M., Costa, M. & Fazzio, A. From DFT to machine learning: recent approaches to materials science–a review. J. Phys. 2, 032001 (2019).
3. Goldsmith, B. R., Esterhuizen, J., Liu, J.-X., Bartel, C. J. & Sutton, C. A. Machine learning for heterogeneous catalyst design and discovery. AIChE-J. 64, 2311–2323 (2018).10.1002/aic.16198 ↗
4. Butler, K. T., Davies, D. W., Cartwright, H., Isayev, O. & Walsh, A. Machine learning for molecular and materials science. Nature 559, 547–555 (2018).10.1038/s41586-018-0337-2 ↗
5. Ramprasad, R., Batra, R., Pilania, G., Mannodi-Kanakkithodi, A. & Kim, C. Machine learning in materials informatics: recent applications and prospects. npj Comput. Mater. 3, 54 (2017).10.1038/s41524-017-0056-5 ↗
6. Schmidt, J., Marques, M. R. G., Botti, S. & Marques, M. A. L. Recent advances and applications of machine learning in solid-state materials science. npj Comput. Mater. 5, 83 (2019).10.1038/s41524-019-0221-0 ↗
7. Pizzi, G., Cepellotti, A., Sabatini, R., Marzari, N. & Kozinsky, B. AiiDA: automated interactive infrastructure and database for computational science. Comput. Mater. Sci. 111, 218–230 (2016).10.1016/j.commatsci.2015.09.013 ↗
8. Kirklin, S. et al. The Open Quantum Materials Database (OQMD): assessing the accuracy of DFT formation energies. npj Comput. Mater. 1, 15010 (2015).10.1038/npjcompumats.2015.10 ↗
9. Jain, A. et al. Commentary: the Materials Project: a materials genome approach to accelerating materials innovation. APL Mater. 1, 011002 (2013).10.1063/1.4812323 ↗
10. Draxl, C. & Scheffler, M. NOMAD: the FAIR concept for big data-driven materials science. MRS Bull. 43, 676–682 (2018).10.1557/mrs.2018.208 ↗
11. Curtarolo, S. et al. AFLOW: an automatic framework for high-throughput materials discovery. Comput. Mater. Sci. 58, 218–226 (2012).10.1016/j.commatsci.2012.02.005 ↗
12. Choudhary, K., Kalish, I., Beams, R. & Tavazza, F. High-throughput identification and characterization of two-dimensional materials using density functional theory. Sci. Rep. 7, 5179 (2017).
13. Hellenbrandt, M. The Inorganic Crystal Structure Database (ICSD)—present and future. Crystallogr. Rev. 10, 17–22 (2004).10.1080/08893110410001664882 ↗
14. Davies, D. W. et al. Computational screening of all stoichiometric. Inorg. Mater. Chem. 1, 617–627 (2016).
15. Hautier, G., Ong, S. P., Jain, A., Moore, C. J. & Ceder, G. Accuracy of density functional theory in predicting formation energies of ternary oxides from binary oxides and its implication on phase stability. Phys. Rev. B 85, 155208 (2012).10.1103/PhysRevB.85.155208 ↗
16. Bartel, C. J., Weimer, A. W., Lany, S., Musgrave, C. B. & Holder, A. M. The role of decomposition reactions in assessing first-principles predictions of solid stability. npj Comput. Mater. 5, 4 (2019).10.1038/s41524-018-0143-2 ↗
17. Bartel, C. J. et al. Physical descriptor for the Gibbs energy of inorganic crystalline solids and temperature-dependent materials chemistry. Nat. Commun. 9, 4168 (2018).10.1038/s41467-018-06682-4 ↗
18. Ong, S. P., Wang, L., Kang, B. & Ceder, G. Li−Fe−P−O2 phase diagram from first principles calculations. Chem. Mater. 20, 1798–1807 (2008).10.1021/cm702327g ↗
19. Zunger, A. Inverse design in search of materials with target functionalities. Nat. Rev. Chem. 2, 0121 (2018).10.1038/s41570-018-0121 ↗
20. Meredig, B. et al. Combinatorial screening for new materials in unconstrained composition space with machine learning. Phys. Rev. B 89, 094104 (2014).10.1103/PhysRevB.89.094104 ↗
21. Ward, L., Agrawal, A., Choudhary, A. & Wolverton, C. A general-purpose machine learning framework for predicting properties of inorganic materials. npj Comput. Mater. 2, 16028 (2016).10.1038/npjcompumats.2016.28 ↗
22. Dunn, A., Wang, Q., Ganose, A., Dopp, D. & Jain, A. Benchmarking materials property prediction methods: the Matbench test set and automatminer reference algorithm. Preprint at https://arxiv.org/abs/2005.00707.
23. Jha, D. et al. ElemNet: deep learning the chemistry of materials from only elemental composition. Sci. Rep. 8, 17593 (2018).
24. Goodall, R., & Lee, A. Predicting materials properties without crystal structure: deep representation learning from stoichiometry. https://arxiv.org/abs/1910.00617.
25. Xie, T. & Grossman, J. C. Crystal graph convolutional neural networks for an accurate and interpretable prediction of material properties. Phys. Rev. Lett. 120, 145301 (2018).10.1103/PhysRevLett.120.145301 ↗
26. Deml, A. M., O’Hayre, R., Wolverton, C. & Stevanović, V. Predicting density functional theory total energies and enthalpies of formation of metal-nonmetal compounds by linear regression. Phys. Rev. B 93, 085142 (2016).10.1103/PhysRevB.93.085142 ↗
27. Faber, F. A., Lindmaa, A., von Lilienfeld, O. A. & Armiento, R. Machine learning energies of 2 million elpasolite ABC2D6 crystals. Phys. Rev. Lett. 117, 135502 (2016).10.1103/PhysRevLett.117.135502 ↗
28. Ward, L. et al. Including crystal structure attributes in machine learning models of formation energies via Voronoi tessellations. Phys. Rev. B 96, 024104 (2017).10.1103/PhysRevB.96.024104 ↗
29. Chen, C., Ye, W., Zuo, Y., Zheng, C. & Ong, S. P. Graph networks as a universal machine learning framework for molecules and crystals. Chem. Mater. 31, 3564–3572 (2019).10.1021/acs.chemmater.9b01294 ↗
30. Chen, T. & Guestrin, C. XGBoost: a scalable tree boosting system. Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge Discovery and Data Mining - KDD ’16 785–794 (2016). https://doi.org/10.1145/2939672.2939785.10.1145/2939672.2939785 ↗
31. Stevanović, V., Lany, S., Zhang, X. & Zunger, A. Correcting density functional theory for accurate predictions of compound enthalpies of formation: fitted elemental-phase reference energies. Phys. Rev. B 85, 115104 (2012).10.1103/PhysRevB.85.115104 ↗
32. Pandey, M. & Jacobsen, K. W. Heats of formation of solids with error estimation: the mBEEF functional with and without fitted reference energies. Phys. Rev. B 91, 235201 (2015).10.1103/PhysRevB.91.235201 ↗
33. Zhang, Y. et al. Efficient first-principles prediction of solid stability: towards chemical accuracy. npj Comput. Mater. 4, 9 (2018).
34. Miedema, A. R. Simple model for alloys. Philips Tech. Rev. 33(no. 6), 149–160 (1973).
35. Isaacs, E. B. & Wolverton, C. Performance of the strongly constrained and appropriately normed density functional for solid-state materials. Phys. Rev. Mater. 2, 063801 (2018).10.1103/PhysRevMaterials.2.063801 ↗
36. Aykol, M., Dwaraknath, S. S., Sun, W. & Persson, K. A. Thermodynamic limit for synthesis of metastable inorganic materials. Sci. Adv. 4, eaaq0148 (2018).10.1126/sciadv.aaq0148 ↗
37. Sun, W. et al. The thermodynamic scale of inorganic crystalline metastability. Sci. Adv. 2, e1600225 (2016).
38. Xu, K. et al. Show, attend and tell: neural image caption generation with visual attention. Preprint at https://arxiv.org/abs/1502.03044.
39. Thackeray, M. M., David, W. I. F., Bruce, P. G. & Goodenough, J. B. Lithium insertion into manganese spinels. Mater. Res. Bull. 18, 461–472 (1983).10.1016/0025-5408(83)90138-1 ↗
40. Armstrong, A. R. & Bruce, P. G. Synthesis of layered LiMnO2 as an electrode for rechargeable lithium batteries. Nature 381, 499–500 (1996).10.1038/381499a0 ↗
41. Thackeray, M. M. et al. Li2MnO3-stabilized LiMO2 (M = Mn, Ni, Co) electrodes for lithium-ion batteries. J. Mater. Chem. 17, 3112–3125 (2007).10.1039/b702425h ↗
42. Lee, J. et al. Reversible Mn2+/Mn4+ double redox in lithium-excess cathode materials. Nature 556, 185–190 (2018).10.1038/s41586-018-0015-4 ↗
43. Noh, J. et al. Inverse design of solid-state materials via a continuous representation. Matter, https://doi.org/10.1016/j.matt.2019.08.017.10.1016/j.matt.2019.08.017 ↗
44. Isayev, O. et al. Universal fragment descriptors for predicting properties of inorganic crystals. Nat. Commun. 8, 15679 (2017).10.1038/ncomms15679 ↗
45. Bartók, A. P., Kondor, R. & Csányi, G. On representing chemical environments. Phys. Rev. B 87, 184115 (2013).10.1103/PhysRevB.87.184115 ↗
46. Jha, D. et al. Enhancing materials property prediction by leveraging computational and experimental data using deep transfer learning. Nat. Commun. 10, 5316 (2019).
47. Ong, S. P. et al. The materials application programming interface (API): a simple, flexible and efficient API for materials data based on REpresentational State Transfer (REST) principles. Comput. Mater. Sci. 97, 209–215 (2015).10.1016/j.commatsci.2014.10.037 ↗
48. Jain, A. et al. Formation enthalpies by mixing GGA and GGA+U calculations. Phys. Rev. B 84, 045115 (2011).10.1103/PhysRevB.84.045115 ↗
49. Wang, L., Maxisch, T. & Ceder, G. Oxidation energies of transition metal oxides within the GGA+U framework. Phys. Rev. B 73, 195107 (2006).10.1103/PhysRevB.73.195107 ↗
50. Ward, L. et al. Matminer: an open source toolkit for materials data mining. Comput. Mater. Sci. 152, 60–69 (2018).10.1016/j.commatsci.2018.05.018 ↗
51. Chollet, F. et al. Keras. Available at: https://keras.io (2015).