journal article·2022-12Open access

Aptamer-functionalized smart photonic hydrogels: application for the detection of thrombin in human serum

Peiyan Shen, Mengru Li, Ran Li, Bo Han, Haojie Ma, Xueyan Hou, Yuqi Zhang, Ji-Jiang Wang

NPG Asia Materials· Volume 14· Issue 1

Abstract

Abstract Smart photonic hydrogels based on two-dimensional photonic crystals (2DPC) provide a promising sensing platform for constructing novel chemical and biological sensors due to their facile optical signal readout and highly sensitive responsivity toward target analytes. Aptamers, as recognition elements with high selectivity and affinity, are extensively used to construct a variety of sensors. Herein, we developed two partially base complementary aptamer-functionalized 2DPC hydrogels as aptasensors for the detection of thrombin (TB) in human serum. The photonic hydrogel aptasensors swelled upon exposure to TB solution, leading to an increase in the particle spacing of the 2DPCs. The particle spacing changes were acquired by simply measuring the diameters of the Debye ring diffracted by the 2DPCs without the requirement of sophisticated instruments. The aptasensor swelling resulted from the decrease in the hydrogel cross-linking density induced by the specific binding between one of the aptamers and TB and the increase in hydrogel mixing free energy induced by the introduction of TB. The particle spacing increase of the optimized aptasensor was linear over the TB concentration range of 1–500 nM, and the limit of detection was 0.64 nM. The constructed 2DPC hydrogel aptasensor was used to detect TB in human serum and achieved recoveries of 95.74–104.21% and a relative standard deviation of 2.52–6.58%, showing the practicability and accuracy of the sensor. The aptamer-actuated 2DPC hydrogel biosensor provides a new strategy for designing other target molecule-sensitive aptasensors, showing great potential for development into home kits.
Source: crossref · Quality: baseline

Research context

OpenAlex topics: Advanced biosensing and bioanalysis techniques · Plasmonic and Surface Plasmon Research · Photonic Crystals and Applications

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

References (46)

Show source-provided references
1. Shen, P. et al. Three-dimensional/two-dimensional photonic crystal hydrogels for biosensing. J. Mater. Chem. C. 9, 5840–5857 (2021).10.1039/D1TC00830G ↗
2. Wang, Y., Zhang, D., Zhang, H., Shang, L. & Zhao, Y. Responsive photonic alginate hydrogel particles for the quantitative detection of alkaline phosphatase. NPG Asia Mater. 14, 54 (2022).10.1038/s41427-022-00401-8 ↗
3. Cai, Z., Smith, N. L., Zhang, J.-T. & Asher, S. A. Two-dimensional photonic crystal chemical and biomolecular sensors. Anal. Chem. 87, 5013–5025 (2015).10.1021/ac504679n ↗
4. Cai, Z. et al. From colloidal particles to photonic crystals: advances in self-assembly and their emerging applications. Chem. Soc. Rev. 50, 5898–5951 (2021).10.1039/D0CS00706D ↗
5. Tikhonov, A. Reflectivity enhanced two-dimensional dielectric particle array monolayer diffraction. J. Nanophotonics 6, 063509 (2012).10.1117/1.JNP.6.063509 ↗
6. Zhang, J.-T., Chao, X., Liu, X. & Asher, S. A. Two-dimensional array Debye ring diffraction protein recognition sensing. Chem. Commun. 49, 6337–6339 (2013).10.1039/c3cc43396j ↗
7. Cai, Z. et al. 2D photonic crystal protein hydrogel coulometer for sensing serum albumin ligand binding. Anal. Chem. 86, 4840–4847 (2014).10.1021/ac404134t ↗
8. Li, X. et al. Redox/temperature responsive nonionic nanogel and photonic crystal hydrogel: Comparison between N, N′-Bis(acryloyl)cystamine and N, N′-methylenebisacrylamide. Polymer 137, 112–121 (2018).10.1016/j.polymer.2017.12.066 ↗
9. Cao, Y. et al. A sulfamethoxazole molecularly imprinted two-dimensional photonic crystal hydrogel sensor. Soft Matter 17, 4969–4978 (2021).10.1039/D1SM00176K ↗
10. Zheng, B., Liu, G., Zhao, L., Wang, G. & Wang, Y. Levofloxacin molecularly imprinted two dimensional photonic crystal hydrogel sensor. Polymer 239, 124448 (2022).10.1016/j.polymer.2021.124448 ↗
11. Cao, Y., Liu, G., Qin, X., Li, H. & Liu, C. Preparation and application of 2-chlorophenol molecularly imprinted photonic crystal hydrogel sensor. J. Macromol. Sci. A 58, 336–343 (2021).10.1080/10601325.2020.1854046 ↗
12. Liu, R. et al. Colorimetric two-dimensional photonic crystal biosensors for label-free detection of hydrogen peroxide. Sens. Actuat. B- Chem. 354, 131236 (2022).10.1016/j.snb.2021.131236 ↗
13. Chen, Q. et al. Construction and research of multiple stimuli-responsive 2D photonic crystal DNA hydrogel sensing platform with double-network structure and signal self-expression. Anal. Chem. 94, 5530–5537 (2022).10.1021/acs.analchem.1c04390 ↗
14. Li, G. et al. Label-free 2D colloidal photonic crystal hydrogel biosensor for urea and urease inhibitor. Sens. Actuat. B- Chem. 277, 591–597 (2018).10.1016/j.snb.2018.09.059 ↗
15. Li, W., Xiang, J., Men, D. & Zhang, H. 2D Au nanosphere arrays/PVA-PBA-modified-hydrogel composite film for glucose detection with strong diffraction intensity and linear response. Nanomaterials 9, 140 (2019).10.3390/nano9020140 ↗
16. Yan, Z. et al. A non-enzymatic urine glucose sensor with 2-D photonic crystal hydrogel. Anal. Bioanal. Chem. 408, 8317–8323 (2016).10.1007/s00216-016-9947-4 ↗
17. Wang, C., Li, F., Bi, Y. & Guo, W. Reversible modulation of 2D photonic crystals with a responsive shape-memory DNA hydrogel film. Adv. Mater. Interfaces 6, 1900556 (2019).10.1002/admi.201900556 ↗
18. Cai, Z., Sasmal, A., Liu, X. & Asher, S. A. Responsive photonic crystal carbohydrate hydrogel sensor materials for selective and sensitive lectin protein detection. ACS Sens. 2, 1474–1481 (2017).10.1021/acssensors.7b00426 ↗
19. Zhang, J.-T., Cai, Z., Kwak, D. H., Liu, X. & Asher, S. A. Two-dimensional photonic crystal sensors for visual detection of Lectin Concanavalin A. Anal. Chem. 86, 9036–9041 (2014).10.1021/ac5015854 ↗
20. Cai, Z. et al. A photonic crystal protein hydrogel sensor for Candida albicans. Angew. Chem. Int. Ed. 54, 13036–13040 (2015).10.1002/anie.201506205 ↗
21. Murtaza, G. et al. Glycated albumin based photonic crystal sensors for detection of lipopolysaccharides and discrimination of Gram-negative bacteria. Anal. Chim. Acta 1117, 1–8 (2020).10.1016/j.aca.2020.04.018 ↗
22. Murtaza, G., Rizvi, A. S., Xue, M., Qiu, L. & Meng, Z. Consensus receptor-binding domain-targeted aptamer selection and designing of a photonic crystal-decorated aptasensor for SARS-CoV-2. Anal. Chem. 94, 7391–7399 (2022).10.1021/acs.analchem.2c00937 ↗
23. Vizovišek, M. et al. Protease specificity: towards in vivo imaging applications and biomarker discovery. Trends Biochem. Sci. 43, 829–844 (2018).10.1016/j.tibs.2018.07.003 ↗
24. Akiyama, H., Ikeda, K., Kondo, H. & McGeer, P. L. Thrombin accumulation in brains of patients with Alzheimer’s disease. Neurosci. Lett. 146, 152–154 (1992).10.1016/0304-3940(92)90065-F ↗
25. Waller, A. P., Nieman, M. T., Smoyer, W. E. & Kerlin, B. A. Endogenous thrombin potential is directly correlated with proteinuria severity in both nephrotic syndrome patients and an animal model of nephrotic syndrome. Blood 124, 4243–4243 (2014).10.1182/blood.V124.21.4243.4243 ↗
26. Tripodi, A. et al. The endogenous thrombin potential and the risk of venous thromboembolism. Thromb. Res. 121, 353–359 (2007).10.1016/j.thromres.2007.04.012 ↗
27. Reddel, C., Tan, C. & Chen, V. Thrombin generation and cancer: contributors and consequences. Cancers 11, 100 (2019).10.3390/cancers11010100 ↗
28. Urbanová, V. et al. Hierarchical porous fluorinated graphene oxide@metal–organic gel composite: label-free electrochemical aptasensor for selective detection of thrombin. ACS Appl. Mater. Interfaces 10, 41089–41097 (2018).10.1021/acsami.8b14344 ↗
29. Kotlarek, D. et al. Surface plasmon resonance-based aptasensor for direct monitoring of thrombin in a minimally processed human blood. Sens. Actuat. B- Chem. 320, 128380 (2020).10.1016/j.snb.2020.128380 ↗
30. Jiang, N., Zhu, T. & Hu, Y. Competitive aptasensor with gold nanoparticle dimers and magnetite nanoparticles for SERS-based determination of thrombin. Microchim. Acta 186, 747 (2019).10.1007/s00604-019-3787-9 ↗
31. Nimjee, S. M., White, R. R., Becker, R. C. & Sullenger, B. A. Aptamers as therapeutics. Annu. Rev. Pharmacol. Toxicol. 57, 61–79 (2017).10.1146/annurev-pharmtox-010716-104558 ↗
32. Bock, L. C., Griffin, L. C., Latham, J. A., Vermasas, E. H. & Toole, J. J. Selection of single-stranded DNA molecules that bind and inhibit human thrombin. Nature 355, 564–566 (1992).10.1038/355564a0 ↗
33. Liu, J., Cao, Z. & Lu, Y. Functional nucleic acid sensors. Chem. Rev. 109, 1948–1998 (2009).10.1021/cr030183i ↗
34. Xiong, X. et al. Responsive DNA-based hydrogels and their applications. Macromol. Rapid Commun. 34, 1271–1283 (2013).10.1002/marc.201300411 ↗
35. Zhang, F., Cao, L. & Yang, W. Preparation of monodisperse and anion-charged polystyrene microspheres stabilized with polymerizable sodium styrene sulfonate by dispersion polymerization. Macromol. Chem. Phys. 211, 744–751 (2010).10.1002/macp.200900573 ↗
36. Zhang, J.-T., Wang, L., Lamont, D. N., Velankar, S. S. & Asher, S. A. Fabrication of large-area two-dimensional colloidal crystals. Angew. Chem. Int. Ed. 124, 6221–6224 (2012).10.1002/ange.201105439 ↗
37. Lumsdon, S. O., Kaler, E. W. & Velev, O. D. Two-dimensional crystallization of microspheres by a coplanar AC electric field. Langmuir 20, 2108–2116 (2004).10.1021/la035812y ↗
38. Pan, F., Zhang, J., Cai, C. & Wang, T. Rapid fabrication of large-area colloidal crystal monolayers by a vortical surface method. Langmuir 22, 7101–7104 (2006).10.1021/la053323n ↗
39. Ye, B.-F. et al. Colorimetric photonic hydrogel aptasensor for the screening of heavy metal ions. Nanoscale 4, 5998 (2012).10.1039/c2nr31601c ↗
40. Mao, Y., Daniel, L. N., Whittaker, N. & Saffiottil, U. DNA binding to crystalline silica characterized by Fourier-transform infrared spectroscopy. Environ. Health Persp. 102, 7 (1994).
41. Thomas, L. C. & Chittenden, R. A. Characteristic infrared absorption frequencies of organophosphorus compounds—I The phosphoryl (P=O) group. Spectrochim. Acta A 20, 467–487 (1964).10.1016/0371-1951(64)80043-6 ↗
42. Babić, S. D. & Serec, K. Sodium and manganese salt DNA thin films: An infrared spectroscopy study. Spectrochim. Acta A 241, 118646 (2020).10.1016/j.saa.2020.118646 ↗
43. Tohidi Moghadam, T. & Ranjbar, B. Heat induced aggregation of gold nanorods for rapid visual detection of lysozyme. Talanta 144, 778–787 (2015).10.1016/j.talanta.2015.06.025 ↗
44. Muntean, C. M. et al. The influence of UV femtosecond laser pulses on bacterial DNA structure, as proved by Fourier Transform Infrared (FT‐IR) spectroscopy. ChemistrySelect 6, 6957–6972 (2021).10.1002/slct.202102097 ↗
45. Wang, X. & Wang, X. Aptamer-functionalized hydrogel diffraction gratings for the human thrombin detection. Chem. Commun. 49, 5957 (2013).10.1039/c3cc41827h ↗
46. Zhang, Q. et al. Electrochemical sandwich-type thrombin aptasensor based on dual signal amplification strategy of silver nanowires and hollow Au–CeO2. Biosens. Bioelectron. 150, 111846 (2020).10.1016/j.bios.2019.111846 ↗