journal article·2015-01Open access

Clicking DNA to gold nanoparticles: poly-adenine-mediated formation of monovalent DNA-gold nanoparticle conjugates with nearly quantitative yield

Guangbao Yao, Hao Pei, Jiang Li, Yun Zhao, Dan Zhu, Yinan Zhang, Yunfeng Lin, Qing Huang, Chunhai Fan

NPG Asia Materials· Volume 7· Issue 1

Abstract

Monovalent DNA–gold nanoparticle (mDNA–AuNP) conjugates hold great promise for widespread applications, especially the construction of well-defined, molecule-like nanosystems. Previously reported methods all rely on the use of thiolated DNA to functionalize AuNPs, resulting in relatively low yields. Here, we report a facile method to rapidly prepare mDNA–AuNPs using a poly-adenine (polyA)-mediated approach. As polyA can selectively bind to AuNPs with high controllability of the surface density of DNA, we can use a DNA strand with a sufficiently long polyA to wrap around the surface of an individual AuNP, preventing further the adsorption of additional strands. Based on this observation, we obtained mDNA–AuNPs with a nearly quantitative yield of ~90% using 80 As, as confirmed by both gel electrophoresis and transmission electron microscope observation. The yields of mDNA–AuNPs were insensitive to the stoichiometric ratio between DNA and AuNPs, suggesting the click chemistry-like nature of this polyA-mediated reaction. mDNA–AuNPs exhibited rapid kinetics and high efficiency for sequence-specific hybridization. More importantly, we demonstrated that AuNPs of fixed valences could form well-defined heterogenous oligomeric nanostructures with precise, atom-like control. An easy, one-step, high-yield (~90%) way of preparing gold nanoparticles functionalized with monovalent DNA is reported by a team in China. Monovalent DNA–gold nanoparticle conjugates have many uses, such as acting as building blocks for the bottom-up construction of nanosystems. Common synthesis methods, however, use thiolated DNA and suffer from low yields. The method reported here, which was developed by researchers at Sichuan University and the Chinese Academy of Sciences, employs a new strategy that uses polyadenine to mediate the functionalization of gold nanoparticles. It involves wrapping the surfaces of the gold nanoparticles with DNA strands attached to sufficiently long lengths of polyadenine, which prevents additional DNA strands being adsorbed. The researchers show the potential of their method by using gold nanoparticles of fixed valences to form oligomeric nanostructures with precise, atom-level control. PolyA can selectively bind to AuNPs with similar affinity to thiolated DNA and better control of the surface density of DNA, which results in the formation of monovalent DNA-gold nanoparticle conjugates . mDNA–AuNPs with in a click chemistry-like manner.
Source: openalex_inverted_index · Quality: baseline

Research context

OpenAlex topics: Advanced biosensing and bioanalysis techniques · Gold and Silver Nanoparticles Synthesis and Applications · RNA Interference and Gene Delivery

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

References (47)

Show source-provided references
1. Mirkin, C. A., Letsinger, R. L., Mucic, R. C. & Storhoff, J. J. A DNA-based method for rationally assembling nanoparticles into macroscopic materials. Nature 382, 607–609 (1996).10.1038/382607a0 ↗
2. Alivisatos, A. P., Johnsson, K. P., Peng, X., Wilson, T. E., Loweth, C. J., Bruchez, M. P. Jr & Schultz, P. G. Organization of 'nanocrystal molecules' using DNA. Nature 382, 609–611 (1996).10.1038/382609a0 ↗
3. Elghanian, R., Storhoff, J. J., Mucic, R. C., Letsinger, R. L. & Mirkin, C. A. Selective colorimetric detection of polynucleotides based on the distance-dependent optical properties of gold nanoparticles. Science 277, 1078–1081 (1997).10.1126/science.277.5329.1078 ↗
4. Loweth, C. J., Caldwell, W. B., Peng, X. G., Alivisatos, A. P. & Schultz, P. G. DNA-based assembly of gold nanocrystals. Angew. Chem. Int. Ed. 38, 1808–1812 (1999).10.1002/(SICI)1521-3773(19990614)38:12<1808::AID-ANIE1808>3.0.CO;2-C ↗
5. Boisselier, E. & Astruc, D. Gold nanoparticles in nanomedicine: preparations, imaging, diagnostics, therapies and toxicity. Chem. Soc. Rev. 38, 1759–1782 (2009).10.1039/b806051g ↗
6. Giljohann, D. A., Seferos, D. S., Daniel, W. L., Massich, M. D., Patel, P. C. & Mirkin, C. A. Gold nanoparticles for biology and medicine. Angew. Chem. Int. Ed. 49, 3280–3294 (2010).10.1002/anie.200904359 ↗
7. Mout, R., Moyano, D. F., Rana, S. & Rotello, V. M. Surface functionalization of nanoparticles for nanomedicine. Chem. Soc. Rev. 41, 2539–2544 (2012).10.1039/c2cs15294k ↗
8. Lin, M. H., Pei, H., Yang, F., Fan, C. H. & Zuo, X. L. Applications of gold nanoparticles in the detection and identification of infectious diseases and biothreats. Adv. Mater. 25, 3490–3496 (2013).10.1002/adma.201301333 ↗
9. Busson, M. P., Rolly, B., Stout, B., Bonod, N., Larquet, E., Polman, A. & Bidault, S. Optical and topological characterization of gold nanoparticle dimers linked by a single DNA double strand. Nano Lett. 11, 5060–5065 (2011).10.1021/nl2032052 ↗
10. Lan, X., Chen, Z., Liu, B. J., Ren, B., Henzie, J. & Wang, Q. DNA-directed gold nanodimers with tunable sizes and interparticle distances and their surface plasmonic properties. Small 9, 2308–2315 (2013).10.1002/smll.201202503 ↗
11. Sheikholeslami, S., Jun, Y. W., Jain, P. K. & Alivisatos, A. P. Coupling of optical resonances in a compositionally asymmetric plasmonic nanoparticle dimer. Nano Lett. 10, 2655–2660 (2010).10.1021/nl101380f ↗
12. Lim, D.-K., Jeon, K.-S., Kim, H. M., Nam, J.-M. & Suh, Y. D. Nanogap-engineerable Raman-active nanodumbbells for single-molecule detection. Nat. Mater. 9, 60–67 (2010).10.1038/nmat2596 ↗
13. Lan, X. & Wang, Q. DNA-programmed self-assembly of photonic nanoarchitectures. NPG Asia Mater 6, e97. doi:10.1038/am.2014.16 (2014).10.1038/am.2014.16 ↗
14. Park, S. Y., Lytton-Jean, A. K., Lee, B., Weigand, S., Schatz, G. C. & Mirkin, C. A. DNA-programmable nanoparticle crystallization. Nature 451, 553–556 (2008).10.1038/nature06508 ↗
15. Macfarlane, R. J., Lee, B., Hill, H. D., Senesi, A. J., Seifert, S. & Mirkin, C. A. Molecular recognition and self-assembly special feature: Assembly and organization processes in DNA-directed colloidal crystallization. Proc. Natl Acad. Sci. USA 106, 10493–10498 (2009).10.1073/pnas.0900630106 ↗
16. Macfarlane, R. J., O'Brien, M. N., Petrosko, S. H. & Mirkin, C. A. Nucleic acid-modified nanostructures as programmable atom equivalents: forging a new “table of elements”. Angew. Chem. Int. Ed. 52, 5688–5698 (2013).10.1002/anie.201209336 ↗
17. Maye, M. M., Kumara, M. T., Nykypanchuk, D., Sherman, W. B. & Gang, O. Switching binary states of nanoparticle superlattices and dimer clusters by DNA strands. Nat. Nanotechnol 5, 116–120 (2010).10.1038/nnano.2009.378 ↗
18. Kumar, S. Discotic liquid crystal-nanoparticle hybrid systems. NPG Asia Mater. 6, e82. doi:10.1038/am.2013.75 (2014).10.1038/am.2013.75 ↗
19. Nam, J. M., Stoeva, S. I. & Mirkin, C. A. Bio-bar-code-based DNA detection with PCR-like sensitivity. J. Am. Chem. Soc. 126, 5932–5933 (2004).10.1021/ja049384+ ↗
20. Zhang, J., Song, S., Zhang, L., Wang, L., Wu, H., Pan, D. & Fan, C. Sequence-specific detection of femtomolar DNA via a chronocoulometric DNA sensor (CDS): Effects of nanoparticle-mediated amplification and nanoscale control of DNA assembly at electrodes. J. Am. Chem. Soc. 128, 8575–8580 (2006).10.1021/ja061521a ↗
21. Cutler, J. I., Zhang, K., Zheng, D., Auyeung, E., Prigodich, A. E. & Mirkin, C. A. Polyvalent nucleic acid nanostructures. J. Am. Chem. Soc. 133, 9254–9257 (2011).10.1021/ja203375n ↗
22. Tan, S. J., Campolongo, M. J., Luo, D. & Cheng, W. Building plasmonic nanostructures with DNA. Nat. Nano 6, 268–276 (2011).10.1038/nnano.2011.49 ↗
23. Guerrero-Martínez, A., Grzelczak, M. & Liz-Marzán, L. M. Molecular thinking for nanoplasmonic design. ACS Nano 6, 3655–3662 (2012).10.1021/nn301390s ↗
24. Zanchet, D., Micheel, C. M., Parak, W. J., Gerion, D. & Alivisatos, A. P. Electrophoretic isolation of discrete Au nanocrystal/DNA conjugates. Nano Lett. 1, 32–35 (2001).10.1021/nl005508e ↗
25. Bidault, S., de Abajo, F. J. G. & Polman, A. Plasmon-based nanolenses assembled on a well-defined DNA template. J. Am. Chem. Soc. 130, 2750–2751 (2008).10.1021/ja711074n ↗
26. Claridge, S. A., Liang, H. Y. W., Basu, S. R., Frechet, J. M. J. & Alivisatos, A. P. Isolation of discrete nanoparticle—DNA conjugates for plasmonic applications. Nano Lett. 8, 1202–1206 (2008).10.1021/nl0802032 ↗
27. Suzuki, K., Hosokawa, K. & Maeda, M. Controlling the number and positions of oligonucleotides on gold nanoparticle surfaces. J. Am. Chem. Soc. 131, 7518–7519 (2009).10.1021/ja9011386 ↗
28. You, C. J., Wilmes, S., Beutel, O., Löchte, S., Podoplelowa, Y., Roder, F., Richter, C., Seine, T., Schaible, D., Uzé, G., Clarke, S., Pinaud, F., Dahan, M. & Piehler, J. Self-controlled monofunctionalization of quantum dots for multiplexed protein tracking in live cells. Angew. Chem. Int. Ed. 49, 4108–4112 (2010).10.1002/anie.200907032 ↗
29. Kim, J. W., Kim, J. H. & Deaton, R. DNA-linked nanoparticle building blocks for programmable matter. Angew. Chem. Int. Ed. 50, 9185–9190 (2011).10.1002/anie.201102342 ↗
30. Li, Z. T., Cheng, E., Huang, W., Zhang, T., Yang, Z., Liu, D. & Tang, Z. Improving the yield of mono-DNA-functionalized gold nanoparticles through dual steric hindrance. J. Am. Chem. Soc. 133, 15284–15287 (2011).10.1021/ja205712a ↗
31. Tikhomirov, G., Hoogland, S., Lee, P. E., Fischer, A., Sargent, E. H. & Kelley, S. O. DNA-based programming of quantum dot valency, self-assembly and luminescence. Nat. Nanotechnol. 6, 485–490 (2011).10.1038/nnano.2011.100 ↗
32. Wen, Y. Q., Chen, L., Wang, W., Xu, L., Du, H., Zhang, Z., Zhang, X. & Song, Y. A flexible DNA modification approach towards construction of gold nanoparticle assemblies. Chem. Commun. 48, 3963–3965 (2012).10.1039/c2cc30846k ↗
33. Farlow, J., Seo, D., Broaders, K. E., Taylor, M. J., Gartner, Z. J. & Jun, Y. W. Formation of targeted monovalent quantum dots by steric exclusion. Nat. Methods 10, 1203–1205 (2013).10.1038/nmeth.2682 ↗
34. Pei, H., Li, F., Wan, Y., Wei, M., Liu, H., Su, Y., Chen, N., Huang, Q. & Fan, C. Designed diblock oligonucleotide for the synthesis of spatially isolated and highly hybridizable functionalization of DNA-gold nanoparticle nanoconjugates. J. Am. Chem. Soc. 134, 11876–11879 (2012).10.1021/ja304118z ↗
35. Pellegrino, T., Sperling, R. A., Alivisatos, A. P. & Parak, W. J. Gel electrophoresis of gold-DNA nanoconjugates. J. Biomed. Biotechnol. 2007, 26796–26796 (2007).10.1155/2007/26796 ↗
36. Hurst, S. J., Lytton-Jean, A. K. R. & Mirkin, C. A. Maximizing DNA loading on a range of gold nanoparticle sizes. Anal. Chem. 78, 8313–8318 (2006).10.1021/ac0613582 ↗
37. Aldaye, F. A. & Sleiman, H. F. Dynamic DNA Templates for discrete gold nanoparticle assemblies: control of geometry, modularity, write/erase and structural switching. J. Am. Chem. Soc. 129, 4130–4131 (2007).10.1021/ja070017i ↗
38. Zheng, Y. Q., Li, Y. L. & Deng, Z. X. Silver nanoparticle-DNA bionanoconjugates bearing a discrete number of DNA ligands. Chem. Commun. 48, 6160–6162 (2012).10.1039/c2cc32338a ↗
39. Zhang, X., Liu, B., Dave, N., Servos, M. R. & Liu, J. Instantaneous attachment of an ultrahigh density of nonthiolated DNA to gold nanoparticles and its applications. Langmuir 28, 17053–17060 (2012).10.1021/la3035424 ↗
40. Zhang, X., Servos, M. R. & Liu, J. W. Instantaneous and quantitative functionalization of gold nanoparticles with thiolated DNA using a pH-Assisted and surfactant-free route. J. Am. Chem. Soc. 134, 7266–7269 (2012).10.1021/ja3014055 ↗
41. Claridge, S. A., Goh, S. L., Fréchet, J. M. J., Williams, S. C., Micheel, C. M. & Alivisatos, A. P. Directed assembly of discrete gold nanoparticle groupings using branched DNA scaffolds. Chem. Mater. 17, 1628–1635 (2005).10.1021/cm0484089 ↗
42. Cheng, W. L., Campolongo, M. J., Cha, J. J., Tan, S. J., Umbach, C. C., Muller, D. A. & Luo, D. Free-standing nanoparticle superlattice sheets controlled by DNA. Nat. Mater. 8, 519–525 (2009).10.1038/nmat2440 ↗
43. Cheng, W. L., Hartman, M. R., Smilgies, D. M., Long, R., Campolongo, M. J., Li, R., Sekar, K., Hui, C. Y. & Luo, D. Probing in real time the soft crystallization of DNA-capped nanoparticles. Angew. Chem. Int. Ed. 49, 380–384 (2010).10.1002/anie.200904066 ↗
44. Baciu, C. L., Becker, J., Janshoff, A. & Sonnichsen, C. Protein-membrane interaction probed by single plasmonic nanoparticles. Nano Lett. 8, 1724–1728 (2008).10.1021/nl080805l ↗
45. Liu, G. L., Yin, Y., Kunchakarra, S., Mukherjee, B., Gerion, D., Jett, S. D., Bear, D. G., Gray, J. W., Alivisatos, A. P., Lee, L. P. & Chen, F. F. A nanoplasmonic molecular ruler for measuring nuclease activity and DNA footprinting. Nat. Nanotechnol. 1, 47–52 (2006).10.1038/nnano.2006.51 ↗
46. Sonnichsen, C., Reinhard, B. M., Liphardt, J. & Alivisatos, A. P. A molecular ruler based on plasmon coupling of single gold and silver nanoparticles. Nat. Biotechnol. 23, 741–745 (2005).10.1038/nbt1100 ↗
47. Lim, D. K., Jeon, K. S., Hwang, J. H., Kim, H., Kwon, S., Suh, Y. D. & Nam, J. M. Highly uniform and reproducible surface-enhanced Raman scattering from DNA-tailorable nanoparticles with 1-nm interior gap. Nat. Nanotechnol. 6, 452–460 (2011).10.1038/nnano.2011.79 ↗