Membrane protein reconstitution in nanodiscs for luminescence spectroscopy studies
Source abstract
Abstract
Abstract ATP-binding cassette (ABC) exporters transport substrates across biological membranes using ATP hydrolysis by a process that involves switching between inward- and outward-facing conformations. Most of the structural studies of ABC proteins have been performed with proteins in detergent micelles, locked in specific conformations and/or at low temperature. In this article, we present recent data from our laboratories where we studied the prototypical ABC exporter MsbA during ATP hydrolysis, at 37°C, reconstituted in a lipid bilayer. These studies were possible through the use of luminescence resonance energy transfer spectroscopy in MsbA reconstituted in nanodiscs. We found major differences between MsbA in these native-like conditions and in previous studies. These include a separation between the nucleotide-binding domains that was much smaller than previously thought, and a large fraction of molecules with associated nucleotide-binding domains in the nucleotide-free apo state. These studies stress the importance of studying membrane proteins in an environment that approaches physiological conditions.
Source: crossref · Quality: baseline
Research context
OpenAlex topics: Drug Transport and Resistance Mechanisms · Lipid Membrane Structure and Behavior · Trace Elements in Health
SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.
Affiliations
1School of Natural Sciences, University of California, Merced, 4225 N. Hospital Road, Atwater, CA 95301, USA
2Department of Cell Physiology and Molecular Biophysics, Texas Tech University Health Sciences Center, 3601 4th Street, Lubbock, TX 79430-6551, USA
References (100+)
Show source-provided references
1. Small-angle scattering gives direct structural information about a membrane protein inside a lipid environment10.1107/S1399004713028344 ↗
2. Dissociation of ATP-binding cassette nucleotide-binding domain dimers into monomers during the hydrolysis cycle10.1074/jbc.M112.340281 ↗
3. Application of the nano-positioning system to the analysis of fluorescence resonance energy transfer networks10.1021/jp2060377 ↗
4. Functional reconstitution of beta2-adrenergic receptors utilizing self-assembling nanodisc technology10.2144/000112169 ↗
5. Characterization of the E506Q and H537A dysfunctional mutants in the E. coli ABC transporter MsbA10.1021/bi101666p ↗
6. In vivo measurement of intramolecular distances using genetically encoded reporters10.1529/biophysj.107.119073 ↗
7. Bilayer thickness and membrane protein function: an energetic perspective10.1146/annurev.biophys.36.040306.132643 ↗
8. Kdo2-lipid A: structural diversity and impact on immunopharmacology10.1111/brv.12114 ↗
9. Reconstitution of membrane proteins in phospholipid bilayer nanodiscs10.1016/S0076-6879(09)64011-8 ↗
10. ABC multidrug transporters: structure, function and role in chemoresistance10.2217/14622416.9.1.105 ↗
11. et al. Beta1-subunit-induced structural rearrangements of the Ca2+- and voltage-activated K+ (BK) channel10.1073/pnas.1606381113 ↗
12. Importance of micellar kinetics in relation to technological processes10.1006/jcis.2001.7955 ↗
13. Nano-positioning system for structural analysis of functional homomeric proteins in multiple conformations10.1016/j.str.2012.08.022 ↗
14. Application of the nano-positioning system to the analysis of fluorescence resonance energy transfer networks10.1021/jp2060377 ↗
15. Association/dissociation of the nucleotide-binding domains of the ATP-binding cassette protein MsbA measured during continuous hydrolysis10.1074/jbc.M113.477976 ↗
16. Recovery of underlying distributions of lifetimes from fluorescence decay data10.1016/0009-2614(86)85107-7 ↗
17. Probing specific lipid-protein interaction by saturation transfer difference NMR spectroscopy10.1021/ja0538942 ↗
18. Reconstitution of membrane proteins in phospholipid bilayer nanodiscs10.1016/S0076-6879(09)64011-8 ↗
19. Nanodiscs for structural and functional studies of membrane proteins10.1038/nsmb.3195 ↗
20. Self-assembly of discoidal phospholipid bilayer nanoparticles with membrane scaffold proteins10.1021/nl025623k ↗
21. ABC multidrug transporters: structure, function and role in chemoresistance10.2217/14622416.9.1.105 ↗
22. Amphipols: polymers that keep membrane proteins soluble in aqueous solutions10.1073/pnas.93.26.15047 ↗
23. Change in permeant size selectivity by phosphorylation of connexin 43 gap-junctional hemichannels by PKC10.1073/pnas.0603154104 ↗
24. Phylogenetic and functional classification of ATP-binding cassette (ABC) systems10.2174/1389203023380486 ↗
25. Extent of voltage sensor movement during gating of shaker K+ channels10.1016/j.neuron.2008.05.006 ↗
26. et al. Membrane transporters in drug development10.1038/nrd3028 ↗
27. Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms10.1002/pro.5560070420 ↗
28. Proteins that bind and move lipids: MsbA and NPC110.3109/10409238.2011.636505 ↗
29. Lipid composition and the lateral pressure profile in bilayers10.1016/S0006-3495(99)77415-1 ↗
30. ATP binding to the motor domain from an ABC transporter drives formation of a nucleotide sandwich dimer10.1016/S1097-2765(02)00576-2 ↗
31. Urbatsch IL et al. Structure of P-glycoprotein reveals a molecular basis for poly-specific drug binding10.1126/science.1168750 ↗
32. The reconstituted Escherichia coli MsbA protein displays lipid flippase activity10.1042/BJ20100144 ↗
33. Opening of the ADP-bound active site in the ABC transporter ATPase dimer: evidence for a constant contact, alternating sites model for the catalytic cycle10.1002/prot.22250 ↗
34. A powerful combinatorial screen to identify high-affinity terbium(III)-binding peptides10.1002/cbic.200390047 ↗
35. Modulation of the interaction between neurotensin receptor NTS1 and Gq protein by lipid10.1016/j.jmb.2012.01.023 ↗
36. Two-dimensional crystals: a powerful approach to assess structure, function and dynamics of membrane proteins10.1016/S0014-5793(01)02746-6 ↗
37. The reconstituted Escherichia coli MsbA protein displays lipid flippase activity10.1042/BJ20100144 ↗
38. Ouabain binding site in a functioning Na+/K+ ATPase10.1074/jbc.M111.267682 ↗
39. et al. Beta1-subunit-induced structural rearrangements of the Ca2+- and voltage-activated K+ (BK) channel10.1073/pnas.1606381113 ↗
40. Solid supported lipid bilayers: from biophysical studies to sensor design10.1016/j.surfrep.2006.06.001 ↗
41. ABC transporters: a riddle wrapped in a mystery inside an enigma10.1016/j.tibs.2009.06.004 ↗
42. Structural biology of Rad50 ATPase: ATP-driven conformational control in DNA double-strand break repair and the ABC-ATPase superfamily10.1016/S0092-8674(00)80890-9 ↗
43. Catalytic and transport cycles of ABC exporters10.1042/bse0500063 ↗
44. Functionally important ATP binding and hydrolysis sites in Escherichia coli MsbA10.1021/bi801745u ↗
45. Conformational dynamics of the nucleotide binding domains and the power stroke of a heterodimeric ABC transporter10.7554/eLife.02740 ↗
46. Bicelles in structure-function studies of membrane-associated proteins10.1016/S0045-2068(02)00527-8 ↗
47. Flexibility in the ABC transporter MsbA: alternating access with a twist10.1073/pnas.0709388104 ↗
48. Interactions of anionic phospholipids and phosphatidylethanolamine with the potassium channel KcsA10.1016/S0006-3495(03)74797-3 ↗
49. A nano-positioning system for macromolecular structural analysis10.1038/nmeth.1259 ↗
50. Co-translational formation and pharmacological characterization of beta1-adrenergic receptor/nanodisc complexes with different lipid environments10.1016/j.bbamem.2016.02.031 ↗
51. Conformational dynamics of the nucleotide binding domains and the power stroke of a heterodimeric ABC transporter10.7554/eLife.02740 ↗
52. Small vertical movement of a K+ channel voltage sensor measured with luminescence energy transfer10.1038/nature03819 ↗
53. Importance of micellar kinetics in relation to technological processes10.1006/jcis.2001.7955 ↗
54. Lipopeptide detergents for membrane protein studies10.1016/j.sbi.2009.07.008 ↗
55. Increased sensitivity and extended range of distance measurements in spin-labeled membrane proteins: Q-band double electron-electron resonance and nanoscale bilayers10.1016/j.bpj.2009.12.4193 ↗
56. Optimized phospholipid bilayer nanodiscs facilitate high-resolution structure determination of membrane proteins10.1021/ja310901f ↗
57. Change in permeant size selectivity by phosphorylation of connexin 43 gap-junctional hemichannels by PKC10.1073/pnas.0603154104 ↗
58. Cell-free production of membrane proteins in Escherichia coli lysates for functional and structural studies10.1007/978-1-4939-3637-3_1 ↗
59. The power, pitfalls and potential of the nanodisc system for NMR-based studies10.1515/hsz-2016-0224 ↗
60. Interactions of anionic phospholipids and phosphatidylethanolamine with the potassium channel KcsA10.1016/S0006-3495(03)74797-3 ↗
61. Emerging roles for lipids in shaping membrane-protein function10.1038/nature08147 ↗
62. Effects of the L511P and D512G mutations on the Escherichia coli ABC transporter MsbA10.1021/bi1018418 ↗
63. Petrovskaya LE et al. Lipid-protein nanodiscs for cell-free production of integral membrane proteins in a soluble and folded state: comparison with detergent micelles, bicelles and liposomes10.1016/j.bbamem.2011.10.020 ↗
64. Reluctance to membrane binding enables accessibility of the synaptobrevin SNARE motif for SNARE complex formation10.1073/pnas.1105128108 ↗
65. Small vertical movement of a K+ channel voltage sensor measured with luminescence energy transfer10.1038/nature03819 ↗
66. Small-angle scattering gives direct structural information about a membrane protein inside a lipid environment10.1107/S1399004713028344 ↗
67. Conformational cycle of the ABC transporter MsbA in liposomes: detailed analysis using double electron-electron resonance spectroscopy10.1016/j.jmb.2009.08.050 ↗
68. Assembly of single bacteriorhodopsin trimers in bilayer nanodiscs10.1016/j.abb.2006.03.013 ↗
69. Understanding polyspecificity of multidrug ABC transporters: closing in on the gaps in ABCB110.1016/j.tibs.2009.07.009 ↗
70. Applications of phospholipid bilayer nanodiscs in the study of membranes and membrane proteins10.1021/bi602371n ↗
71. Nucleotide-induced structural changes in P-glycoprotein observed by electron microscopy10.1074/jbc.M707028200 ↗
72. Solid supported lipid bilayers: from biophysical studies to sensor design10.1016/j.surfrep.2006.06.001 ↗
73. Kinetics of the association/dissociation cycle of an ATP-binding cassette nucleotide-binding domain10.1074/jbc.M111.318378 ↗
74. et al. Membrane transporters in drug development10.1038/nrd3028 ↗
75. An asymmetric post-hydrolysis state of the ABC transporter ATPase dimer10.1371/journal.pone.0059854 ↗
76. Refined structures of mouse P-glycoprotein10.1002/pro.2387 ↗
77. Screening for lipid requirements of membrane proteins by combining cell-free expression with nanodiscs10.1016/bs.mie.2014.12.016 ↗
78. Bilayer thickness and membrane protein function: an energetic perspective10.1146/annurev.biophys.36.040306.132643 ↗
79. Association/dissociation of the nucleotide-binding domains of the ATP-binding cassette protein MsbA measured during continuous hydrolysis10.1074/jbc.M113.477976 ↗
80. Engineering encodable lanthanide-binding tags into loop regions of proteins10.1021/ja104983t ↗
81. Stevens RC et al. Steroid-based facial amphiphiles for stabilization and crystallization of membrane proteins10.1073/pnas.1221442110 ↗
82. Probing specific lipid-protein interaction by saturation transfer difference NMR spectroscopy10.1021/ja0538942 ↗
83. ATPase activity of the MsbA lipid flippase of Escherichia coli10.1074/jbc.M205857200 ↗
84. Nucleotide-induced structural changes in P-glycoprotein observed by electron microscopy10.1074/jbc.M707028200 ↗
85. ATP binding to two sites is necessary for dimerization of nucleotide-binding domains of ABC proteins10.1016/j.bbrc.2013.11.050 ↗
86. Co-translational formation and pharmacological characterization of beta1-adrenergic receptor/nanodisc complexes with different lipid environments10.1016/j.bbamem.2016.02.031 ↗
87. Hydrolysis at one of the two nucleotide-binding sites drives the dissociation of ATP-binding cassette nucleotide-binding domain dimers10.1074/jbc.M113.500371 ↗
88. Petrovskaya LE et al. Lipid-protein nanodiscs for cell-free production of integral membrane proteins in a soluble and folded state: comparison with detergent micelles, bicelles and liposomes10.1016/j.bbamem.2011.10.020 ↗
89. Self-assembly of discoidal phospholipid bilayer nanoparticles with membrane scaffold proteins10.1021/nl025623k ↗
90. Curvature forces in membrane lipid-protein interactions10.1021/bi301332v ↗
91. Homotropic cooperativity of monomeric cytochrome P450 3A4 in a nanoscale native bilayer environment10.1016/j.abb.2004.07.003 ↗
92. Screening for lipid requirements of membrane proteins by combining cell-free expression with nanodiscs10.1016/bs.mie.2014.12.016 ↗
93. Small-angle X-ray scattering of the cholesterol incorporation into human ApoA1-POPC discoidal particles10.1016/j.bpj.2015.06.032 ↗
94. A powerful combinatorial screen to identify high-affinity terbium(III)-binding peptides10.1002/cbic.200390047 ↗
95. Cell-free protein synthesis of membrane (1,3)-beta-d-glucan (curdlan) synthase: co-translational insertion in liposomes and reconstitution in nanodiscs10.1016/j.bbamem.2012.10.003 ↗
96. Thiol-reactive luminescent lanthanide chelates: Part 210.1021/bc034029e ↗
97. Protein-protein and protein-lipid interactions in domain-assembly: lessons from giant unilamellar vesicles10.1016/j.bbamem.2010.02.028 ↗
98. Characterization of the Walker A motif of MsbA using site-directed spin labeling electron paramagnetic resonance spectroscopy10.1021/bi047568v ↗
99. Transport of HIV protease inhibitors through the blood-brain barrier and interactions with the efflux proteins, P-glycoprotein and multidrug resistance proteins10.1097/00126334-200406010-00001 ↗
100. Cell-free expressed bacteriorhodopsin in different soluble membrane mimetics: biophysical properties and NMR accessibility10.1016/j.str.2013.01.005 ↗