journal article·2024Open access

Viral capsid structural assembly governs the reovirus binding interface to NgR1

Rita dos Santos Natividade, Andra C. Dumitru, Alessandro Nicoli, Michael Strebl, Danica M. Sutherland, Olivia L. Welsh, Mustafa Ghulam, Thilo Stehle, Terence S. Dermody, Antonella Di Pizio, Melanie Koehler, David Alsteens

Nanoscale Horizons· Volume 9· Issue 11

Abstract

Understanding the mechanisms underlying viral entry is crucial for controlling viral diseases. In this study, we investigated the interactions between reovirus and Nogo-receptor 1 (NgR1), a key mediator of reovirus entry into the host central nervous system. NgR1 exhibits a unique bivalent interaction with the reovirus capsid, specifically binding at the interface between adjacent heterohexamers arranged in a precise structural pattern on the curved virus surface. Using single-molecule techniques, we explored for the first time how the capsid molecular architecture and receptor polymorphism influence virus binding. We compared the binding affinities of human and mouse NgR1 to reovirus μ1/σ3 proteins in their isolated form, self-assembled in 2D capsid patches, and within the native 3D viral topology. Our results underscore the essential role of the concave side of NgR1 and emphasize that the spatial organization and curvature of the virus are critical determinants of the stability of the reovirus-NgR1 complex. This study highlights the importance of characterizing interactions in physiologically relevant spatial configurations, providing precise insights into virus-host interactions and opening new avenues for therapeutic interventions against viral infections.
Source: openalex_inverted_index · Quality: candidate unverified · Source record ↗

Research context

OpenAlex topics: Viral gastroenteritis research and epidemiology · Bacteriophages and microbial interactions · Virus-based gene therapy research

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Louvain Institute of Biomolecular Science and Technology, Université catholique de Louvain, Louvain-la-Neuve, Belgium

Leibniz Institute for Food Systems Biology, Technical University of Munich, Freising, Germany

Chemoinformatics and Protein Modelling, Department of Molecular Life Sciences, School of Life Sciences, Technical University of Munich, 85354 Freising, Germany

Interfaculty Institute of Biochemistry, University of Tübingen, Tübingen, Germany

Department of Pediatrics, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA

Institute of Infection, Inflammation, and Immunity, UPMC Children's Hospital of Pittsburgh, Pittsburgh, Pennsylvania, USA

Department of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA

WELBIO department, WEL Research Institute, 1300 Wavre, Belgium

Funding

Fonds De La Recherche Scientifique - FNRS · U.S. Public Health Service · European Research Council

References (54)

Show source-provided references
1. Grove · J. Cell Biol. · 2011 · 195 · 107110.1083/jcb.201108131 ↗
2. Yamauchi · J. Cell Sci. · 2013 · 126 · 128910.1242/jcs.130062 ↗
3. K.Guglielmi , E.Johnson , T.Stehle and T.Dermody , Attachment and cell entry of mammalian orthoreovirus , Reoviruses: Entry, Assembly and Morphogenesis , 2006 , pp. 1–38
4. Sabin · Science · 1959 · 130 · 138710.1126/science.130.3386.1387 ↗
5. K.Tyler , Pathogenesis of reovirus infections of the central nervous system , Reoviruses II: Cytopathogenicity and Pathogenesis , 1998 , pp. 93–12410.1007/978-3-642-72095-6_6 ↗
6. Raine · J. Neuropathol. Exp. Neurol. · 1973 · 32 · 1910.1097/00005072-197301000-00002 ↗
7. Antar · Cell Host Microbe · 2009 · 5 · 5910.1016/j.chom.2008.12.001 ↗
8. Bass · Lab. Invest. · 1988 · 58 · 226
9. Weiner · Proc. Natl. Acad. Sci. U. S. A. · 1977 · 74 · 574410.1073/pnas.74.12.5744 ↗
10. Wolf · Science · 1981 · 212 · 47110.1126/science.6259737 ↗
11. Chappell · EMBO J. · 2002 · 21 · 110.1093/emboj/21.1.1 ↗
12. Reiter · PLoS Pathog. · 2011 · 7 · e100216610.1371/journal.ppat.1002166 ↗
13. Zhang · Structure · 2005 · 13 · 154510.1016/j.str.2005.07.012 ↗
14. Shang · Nat. Commun. · 2023 · 14 · 261510.1038/s41467-023-38327-6 ↗
15. Sutherland · Proc. Natl. Acad. Sci. U. S. A. · 2023 · 120 · e221940412010.1073/pnas.2219404120 ↗
16. Wilson · J. Virol. · 2002 · 76 · 983210.1128/JVI.76.19.9832-9843.2002 ↗
17. Dryden · J. Cell Biol. · 1993 · 122 · 102310.1083/jcb.122.5.1023 ↗
18. Doyle · J. Biol. Chem. · 2012 · 287 · 802910.1074/jbc.M111.334854 ↗
19. Barton · J. Clin. Invest. · 2003 · 111 · 182310.1172/JCI16303 ↗
20. Konopka-Anstadt · Cell Host Microbe · 2014 · 15 · 68110.1016/j.chom.2014.05.010 ↗
21. McGee · Trends Neurosci. · 2003 · 26 · 19310.1016/S0166-2236(03)00062-6 ↗
22. Wang · J. Neurosci. · 2002 · 22 · 550510.1523/JNEUROSCI.22-13-05505.2002 ↗
23. Aravamudhan · J. Virol. · 2022 · 96 · e0005510.1128/jvi.00055-22 ↗
24. Valbuena · Nanoscale · 2015 · 7 · 1495310.1039/C5NR04023J ↗
25. P. J.de Pablo , Seminars in cell & developmental biology , Elsevier , 2018 , vol. 73, pp. 199–208
26. Müller · Chem. Rev. · 2020 · 121 · 1170110.1021/acs.chemrev.0c00617 ↗
27. Bustamante · Science · 1994 · 265 · 159910.1126/science.8079175 ↗
28. Evans · Biophys. J. · 1997 · 72 · 154110.1016/S0006-3495(97)78802-7 ↗
29. Evans · Science · 2007 · 316 · 114810.1126/science.1137592 ↗
30. Williams · Anal. Chim. Acta · 2003 · 479 · 10710.1016/S0003-2670(02)01569-6 ↗
31. Lauré · J. Biol. Chem. · 2007 · 282 · 571510.1074/jbc.M609797200 ↗
32. Pronker · Acta Crystallogr., Sect. D: Struct. Biol. · 2017 · 73 · 86010.1107/S2059798317013791 ↗
33. Kobayashi · Virology · 2010 · 398 · 19410.1016/j.virol.2009.11.037 ↗
34. Coombs · Curr. Protocols · 2023 · 3 · e71610.1002/cpz1.716 ↗
35. Ebner · Ultramicroscopy · 2007 · 107 · 92210.1016/j.ultramic.2007.02.035 ↗
36. Wildling · Bioconjugate Chem. · 2011 · 22 · 123910.1021/bc200099t ↗
37. Lee · Anal. Chem. · 2007 · 79 · 268010.1021/ac0619231 ↗
38. Butt · Nanotechnology · 1995 · 6 · 110.1088/0957-4484/6/1/001 ↗
39. Alsteens · Nat. Nanotechnol. · 2017 · 12 · 17710.1038/nnano.2016.228 ↗
40. Newton · Nat. Protoc. · 2017 · 12 · 227510.1038/nprot.2017.112 ↗
41. Rankl · At. Force Microsc. Biomed. Res. · 2011 · 19710.1007/978-1-61779-105-5_13 ↗
42. Jorgensen · J. Am. Chem. Soc. · 1988 · 110 · 165710.1021/ja00214a001 ↗
43. Case · J. Comput. Chem. · 2005 · 26 · 166810.1002/jcc.20290 ↗
44. Salomon-Ferrer · Wiley Interdiscip. Rev.: Comput. Mol. Sci. · 2013 · 3 · 198
45. Maier · J. Chem. Theory Comput. · 2015 · 11 · 369610.1021/acs.jctc.5b00255 ↗
46. Loncharich · Biopolymers · 1992 · 32 · 52310.1002/bip.360320508 ↗
47. Kräutler · J. Comput. Chem. · 2001 · 22 · 50110.1002/1096-987X(20010415)22:5<501::AID-JCC1021>3.0.CO;2-V ↗
48. Essmann · J. Chem. Phys. · 1995 · 103 · 857710.1063/1.470117 ↗
49. Abraham · SoftwareX · 2015 · 1 · 1910.1016/j.softx.2015.06.001 ↗
50. H.Bekker , et al. , 4th international conference on computational physics (PC 92) , World Scientific Publishing , 1993 , pp. 252–256
51. Martoňák · Phys. Rev. Lett. · 2003 · 90 · 07550310.1103/PhysRevLett.90.075503 ↗
52. R. J.Gowers , et al. , Proceedings of the 15th python in science conference , SciPy Austin , TX , 2016 , vol. 98, pp. 105
53. Michaud-Agrawal · J. Comput. Chem. · 2011 · 32 · 231910.1002/jcc.21787 ↗
54. Hunter · Comput. Sci. Eng. · 2007 · 9 · 9010.1109/MCSE.2007.55 ↗