journal article·2025

Quantifying the growth mechanism of solid-state nanopores under high-voltage conditioning

Thomas St-Denis, Ryan Huang, Xavier Capaldi, Mackenzie Pereira, Ioannidis Duchastel-Vassaramva, Zezhou Liu, Peter Grütter, Walter Reisner

Nanoscale· Volume 17· Issue 7
Publisher page

Abstract

Solid-state nanopores exhibit dynamically variable sizes influenced by buffer conditions and applied electric field. While dynamical pore behavior can complicate biomolecular sensing, it also offers opportunities for controlled, in situ modification of pore size post-fabrication. In order to optimally harness solid-state pore dynamics for controlled growth, there is a need to systematically quantify pore growth dynamics and ideally develop quantitative models to describe pore growth. Using high-voltage pulse conditioning, we investigate the expansion of nanopores and track their growth over time. Our findings reveal that pore growth follows a two-regime model: an initial transient regime characterized by an exponential rise, followed by a steady-state regime with linear growth. The pore growth rate increases with voltage, while the duration of the transition regime decreases with voltage. We propose a simple electrochemical etching model based on hydrolysis and solute removal to quantify time-dynamics of growing pores and rationalize the mechanism of electric-field driven pore growth, with numerical solutions aligning closely with experimental data. These insights enhance the understanding of nanopore conditioning, providing a theoretical framework for controlled pore size modification.
Source: europepmc · Quality: candidate unverified · Source record ↗

Research context

OpenAlex topics: Nanopore and Nanochannel Transport Studies · Ion-surface interactions and analysis · Thermal properties of materials

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Department of Physics, McGill University, 845 Sherbrooke West, Montréal, Canada

Funding

Fonds de Recherche du Québec - Nature et Technologies · Natural Sciences and Engineering Research Council of Canada

References (55)

Show source-provided references
1. B.Sakmann , E.Neher , R.Penner , A.Marty , S. H.Heinemann , F. J.Sigworth , K.Benndorf , K. D.Gillis , G.Stuart , J.Eilers , R.Schneggenburger , A.Konnerth , P.Jonas , R. H.Chow , L. V.Rüden , R.Hedrich , D. W.Hilgemann , D. W.McBride Jr. , O. P.Hamill , W.Stühmer , A. B.Parekh , H.Monyer , J. K. H.Hörber , J.Mosbacher , W.Häberle , D.Colquhoun , A. G.Hawkes and P.Läuger , Single-Channel Recording , Springer US , Boston, MA , 1995
2. Dekker · Nat. Nanotechnol. · 2007 · 2 · 20910.1038/nnano.2007.27 ↗
3. Branton · Nat. Biotechnol. · 2008 · 26 · 114610.1038/nbt.1495 ↗
4. Kasianowicz · Annu. Rev. Anal. Chem. · 2008 · 1 · 73710.1146/annurev.anchem.1.031207.112818 ↗
5. Venkatesan · Nat. Nanotechnol. · 2011 · 6 · 61510.1038/nnano.2011.129 ↗
6. Wanunu · Phys. Life Rev. · 2012 · 9 · 12510.1016/j.plrev.2012.05.010 ↗
7. Navarre-Sitchler · Rev. Mineral. Geochem. · 2015 · 80 · 33110.2138/rmg.2015.80.10 ↗
8. Yuan · Electrophoresis · 2007 · 28 · 59510.1002/elps.200600612 ↗
9. Schoch · Rev. Mod. Phys. · 2008 · 80 · 83910.1103/RevModPhys.80.839 ↗
10. Sparreboom · New J. Phys. · 2010 · 12 · 01500410.1088/1367-2630/12/1/015004 ↗
11. Kasianowicz · Proc. Natl. Acad. Sci. U. S. A. · 1996 · 93 · 1377010.1073/pnas.93.24.13770 ↗
12. Gu · Nature · 1999 · 398 · 68610.1038/19491 ↗
13. Howorka · Nat. Biotechnol. · 2001 · 19 · 63610.1038/90236 ↗
14. Meller · Phys. Rev. Lett. · 2001 · 86 · 343510.1103/PhysRevLett.86.3435 ↗
15. Derrington · Proc. Natl. Acad. Sci. U. S. A. · 2010 · 107 · 1606010.1073/pnas.1001831107 ↗
16. Schneider · Nat. Biotechnol. · 2012 · 30 · 32610.1038/nbt.2181 ↗
17. Feng · Genomics, Proteomics Bioinf. · 2015 · 13 · 410.1016/j.gpb.2015.01.009 ↗
18. Zhang · Small · 2018 · 14 · 180189010.1002/smll.201801890 ↗
19. Liu · Small · 2019 · 15 · 190170410.1002/smll.201901704 ↗
20. Liu · Small · 2020 · 16 · 190537910.1002/smll.201905379 ↗
21. Miles · Chem. Soc. Rev. · 2013 · 42 · 1510.1039/C2CS35286A ↗
22. Lindsay · Nat. Nanotechnol. · 2016 · 11 · 10910.1038/nnano.2016.9 ↗
23. Howorka · Nat. Nanotechnol. · 2017 · 12 · 61910.1038/nnano.2017.99 ↗
24. Rollings · Nanotechnology · 2015 · 26 · 04400110.1088/0957-4484/26/4/044001 ↗
25. Beamish · Nanotechnology · 2012 · 23 · 40530110.1088/0957-4484/23/40/405301 ↗
26. Leung · Nanotechnology · 2020 · 31 · 44LT0110.1088/1361-6528/aba86e ↗
27. R. K.Iler , The chemistry of silica: solubility, polymerization, colloid and surface properties, and biochemistry , Wiley , New York , 1979
28. Nesbitt · Geochim. Cosmochim. Acta · 1984 · 48 · 152310.1016/0016-7037(84)90408-3 ↗
29. Rimstidt · Geochim. Cosmochim. Acta · 2015 · 167 · 19510.1016/j.gca.2015.07.030 ↗
30. Crundwell · ACS Omega · 2017 · 2 · 111610.1021/acsomega.7b00019 ↗
31. Skibsted · J. Hazard. Mater. · 2018 · 358 · 45910.1016/j.jhazmat.2018.05.033 ↗
32. Wang · Minerals · 2024 · 358 · 36010.3390/min14040360 ↗
33. Winterhalter · Phys. Rev. A · 1987 · 36 · 587410.1103/PhysRevA.36.5874 ↗
34. Weaver · Bioelectrochem. Bioenerg. · 1996 · 41 · 13510.1016/S0302-4598(96)05062-3 ↗
35. Deng · J. Phys. D: Appl. Phys. · 2014 · 47 · 44540110.1088/0022-3727/47/44/445401 ↗
36. Wells · Gene Ther. · 2004 · 11 · 136310.1038/sj.gt.3302337 ↗
37. Krassowska · Biophys. J. · 2007 · 92 · 40410.1529/biophysj.106.094235 ↗
38. Potočnik · Pharmaceutics · 2022 · 14 · 270010.3390/pharmaceutics14122700 ↗
39. Barnett · J. Electroanal. Chem. Interfacial Electrochem. · 1991 · 320 · 16310.1016/0022-0728(91)85625-Y ↗
40. Wilhelm · Biophys. J. · 1993 · 64 · 12110.1016/S0006-3495(93)81346-8 ↗
41. Sung · Biophys. J. · 1997 · 73 · 179710.1016/S0006-3495(97)78210-9 ↗
42. Winterhalter · Colloids Surf., A · 1999 · 149 · 16110.1016/S0927-7757(98)00291-X ↗
43. Neu · Bioelectrochemistry · 2003 · 60 · 10710.1016/S1567-5394(03)00051-3 ↗
44. Kroeger · Biophys. J. · 2009 · 96 · 90710.1016/j.bpj.2008.10.035 ↗
45. Kotnik · Annu. Rev. Biophys. · 2019 · 48 · 6310.1146/annurev-biophys-052118-115451 ↗
46. Van Den Hout · Nanotechnology · 2010 · 21 · 11530410.1088/0957-4484/21/11/115304 ↗
47. Chou · ACS Nano · 2020 · 14 · 671510.1021/acsnano.9b09964 ↗
48. Yazda · Nano Lett. · 2021 · 21 · 415210.1021/acs.nanolett.0c04704 ↗
49. Zhang · Small Methods · 2019 · 3 · 190014710.1002/smtd.201900147 ↗
50. St-Denis · Rev. Sci. Instrum. · 2019 · 90 · 12370310.1063/1.5129665 ↗
51. Kowalczyk · Nanotechnology · 2011 · 22 · 31510110.1088/0957-4484/22/31/315101 ↗
52. Zhmud · J. Colloid Interface Sci. · 1999 · 218 · 58210.1006/jcis.1999.6425 ↗
53. T. F.Coleman and Y.Li , On the Convergence of Reflective Newton Methods for Large-scale Nonlinear Minimization Subject to Bounds , 1992
54. Coleman · SIAM J. Control Optim. · 1996 · 6 · 41810.1137/0806023 ↗
55. Lanzavecchia · Adv. Opt. Mater. · 2023 · 11 · 230078610.1002/adom.202300786 ↗