journal article·2024Open access

Nucleic acid detection with single-base specificity integrating isothermal amplification and light-up aptamer probes

Jaekyun Baek, Jihyun Park, Youngeun Kim

Nanoscale· Volume 16· Issue 43

Abstract

We report a novel platform for label-free nucleic acid detection using isothermal amplification and light-up aptamer probes. This assay converts double-stranded amplicons into single-stranded targets to enable sequence-specific hybridization with split dapoxyl aptamer probes, offering attomolar sensitivity and single-base specificity.
Source: openalex_inverted_index · Quality: candidate unverified · Source record ↗

Research context

OpenAlex topics: Advanced biosensing and bioanalysis techniques · Biosensors and Analytical Detection · Advanced Biosensing Techniques and Applications

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Interdisciplinary Program in Bioengineering, Seoul National University, Seoul 08826, Republic of Korea

Research Institute of Advanced Materials, Seoul National University, Seoul, 08826, Republic of Korea

Department of Materials Science and Engineering, Seoul National University, Seoul, 08826, Republic of Korea

Funding

National Research Foundation of Korea · Seoul National University

References (29)

Show source-provided references
1. Malorny · Appl. Environ. Microbiol. · 2003 · 69 · 29010.1128/AEM.69.1.290-296.2003 ↗
2. Sengupta · Proc. Natl. Acad. Sci. U. S. A. · 2019 · 116 · 893110.1073/pnas.1815046116 ↗
3. Vasioukhin · Br. J. Haematol. · 1994 · 86 · 77410.1111/j.1365-2141.1994.tb04828.x ↗
4. Jergens · Nanoscale · 2023 · 15 · 939010.1039/D3NR01424J ↗
5. Nayak · Nanoscale · 2022 · 14 · 1609710.1039/D2NR03810B ↗
6. Vindeirinho · Front. Cell. Infect. Microbiol. · 2022 · 12 · 79967810.3389/fcimb.2022.799678 ↗
7. Heid · Genome Res. · 1996 · 6 · 98610.1101/gr.6.10.986 ↗
8. Parida · Rev. Med. Virol. · 2008 · 18 · 40710.1002/rmv.593 ↗
9. Lobato · TrAC, Trends Anal. Chem. · 2018 · 98 · 1910.1016/j.trac.2017.10.015 ↗
10. Notomi · Nucleic Acids Res. · 2000 · 28 · e6310.1093/nar/28.12.e63 ↗
11. Dean · Proc. Natl. Acad. Sci. U. S. A. · 2002 · 99 · 526110.1073/pnas.082089499 ↗
12. Zhao · Chem. Rev. · 2015 · 115 · 1249110.1021/acs.chemrev.5b00428 ↗
13. Liu · Nano Convergence · 2024 · 11 · 210.1186/s40580-023-00408-z ↗
14. Dwivedi-Yu · PLoS Comput. Biol. · 2023 · 19 · e101013710.1371/journal.pcbi.1010137 ↗
15. Narasimhan · Adv. Mater. Technol. · 2023 · 8 · 230023010.1002/admt.202300230 ↗
16. Seyrig · J. Microbiol. Methods · 2015 · 119 · 22310.1016/j.mimet.2015.11.004 ↗
17. Piepenburg · PLoS Biol. · 2006 · 4 · e20410.1371/journal.pbio.0040204 ↗
18. Kerr · J. Biol. Chem. · 1972 · 247 · 31110.1016/S0021-9258(19)45791-8 ↗
19. Sayers · Nucleic Acids Res. · 1988 · 16 · 79110.1093/nar/16.3.791 ↗
20. Noteborn · Bioconjugate Chem. · 2020 · 32 · 9410.1021/acs.bioconjchem.0c00644 ↗
21. Y.Kim , A. B.Yaseen , J. Y.Kishi , F.Hong , S. K.Saka , K.Sheng , N.Gopalkrishnan , T. E.Schaus and P.Yin
22. Zhang · Nature · 1992 · 358 · 59110.1038/358591a0 ↗
23. Connelly · Chem. Commun. · 2021 · 57 · 367210.1039/D1CC00594D ↗
24. Kikuchi · Anal. Chem. · 2019 · 91 · 266710.1021/acs.analchem.8b03964 ↗
25. Turner · Nat. Rev. Microbiol. · 2019 · 17 · 20310.1038/s41579-018-0147-4 ↗
26. Thorven · J. Virol. · 2005 · 79 · 1535110.1128/JVI.79.24.15351-15355.2005 ↗
27. Ignatiadis · Nat. Rev. Clin. Oncol. · 2021 · 18 · 29710.1038/s41571-020-00457-x ↗
28. Abd El Wahed · PLoS One · 2013 · 8 · e7164210.1371/journal.pone.0071642 ↗
29. Li · Anal. Chim. Acta · 2020 · 1127 · 21710.1016/j.aca.2020.06.001 ↗