journal article·2024

Nickel as a modifier of calcium oxalate: an in situ liquid cell TEM investigation of nucleation and growth

Lioudmila V. Sorokina, Abhijit H. Phakatkar, Pavel L. Rehak, Petr Král, Tolou Shokuhfar, Reza Shahbazian-Yassar

Nanoscale· Volume 16· Issue 8
Publisher page

Abstract

Despite extensive research on the nucleation and growth of calcium oxalate (CaOx) crystals, there are still several challenges and unknowns that remain. In particular, the role of trace metal elements in the promotion or inhibition of CaOx crystals is not well understood. In the present study, in situ graphene liquid cell transmission electron microscopy (in situ GLC TEM) was used to observe real-time, nanoscale transformations of CaOx crystals in the presence of nickel ions (Ni2+). The results showed that Ni2+ form Ni-water complexes, acting as a shape-directing species, generating a unique morphology and altering growth kinetics. Transient adsorption of Ni-water complexes resulted in a metastable phase formation of calcium oxalate trihydrate. Atomistic molecular dynamics simulations confirmed that Ni2+ acts as a weak inhibitor which slows down the CaOx crystallization, elucidating that Ni2+ impacts small-sized CaOx clusters by bringing more water into the clusters. This work highlighted the intricacies behind the effect of Ni2+ on CaOx biomineralization that were made possible to discern using in situ GLC TEM.
Source: europepmc · Quality: candidate unverified · Source record ↗

Research context

OpenAlex topics: Kidney Stones and Urolithiasis Treatments · NMR spectroscopy and applications · Clay minerals and soil interactions

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Department of Civil, Materials, and Environmental Engineering, University of Illinois Chicago, Chicago, IL, 60607, USA

Department of Biomedical Engineering, University of Illinois Chicago, Chicago, IL, 60607, USA

Department of Chemistry, University of Illinois Chicago, Chicago, IL, 60607, USA

Departments of Chemistry, Physics, Pharmaceutical Sciences, and Chemical Engineering, University of Illinois Chicago, Chicago, IL, 60607, USA

Department of Mechanical and Industrial Engineering, University of Illinois Chicago, Chicago, IL, 60607, USA

Funding

Division of Materials Research

References (68)

Show source-provided references
1. Franceschi · Trends Plant Sci. · 2001 · 6 · 33110.1016/S1360-1385(01)02014-3 ↗
2. Hofmann · Chem. Geol. · 1998 · 149 · 12710.1016/S0009-2541(98)00043-6 ↗
3. Cheng · J. Geophys. Res.: Biogeosci. · 2016 · 121 · 159310.1002/2016JG003439 ↗
4. Zhao · Astrobiology · 2022 · 22 · 3510.1089/ast.2020.2416 ↗
5. Bahadoran · Nutr. J. · 2022 · 21 · 110.1186/s12937-022-00773-1 ↗
6. Castellaro · BMC Cancer · 2015 · 15 · 110.1186/s12885-015-1747-2 ↗
7. Khan · Nat. Rev. Dis. Primers · 2016 · 2 · 110.1038/nrdp.2016.8 ↗
8. Romero · Rev. Urol. · 2010 · 12 · e86
9. Saigal · Kidney Int. · 2005 · 68 · 180810.1111/j.1523-1755.2005.00599.x ↗
10. Worcester · N. Engl. J. Med. · 2010 · 363 · 95410.1056/NEJMcp1001011 ↗
11. Tefekli · Sci. World J. · 2013 · 2013 · 1
12. Thongboonkerd · Clin. Chim. Acta · 2006 · 367 · 12010.1016/j.cca.2005.11.033 ↗
13. Izatulina · Cryst. Growth Des. · 2018 · 18 · 546510.1021/acs.cgd.8b00826 ↗
14. Tomžič · J. Urol. · 1982 · 128 · 20510.1016/S0022-5347(17)52819-0 ↗
15. Deganello · Scanning Electron Microsc. · 1986 · 1986 · 45
16. Rimer · Science · 2010 · 330 · 33710.1126/science.1191968 ↗
17. Weber · RSC Adv. · 2015 · 5 · 9862610.1039/C5RA20870J ↗
18. McBride · J. Colloid Interface Sci. · 2017 · 486 · 30910.1016/j.jcis.2016.09.079 ↗
19. Barker · J. Cryst. Growth · 2020 · 546 · 12577710.1016/j.jcrysgro.2020.125777 ↗
20. Olafson · Chem. Mater. · 2016 · 28 · 845310.1021/acs.chemmater.6b03550 ↗
21. Yang · Indian J. Chem., Sect. A: Inorg., Bio-Inorg., Phys., Theor. Anal. Chem. · 2020 · 57 · 9
22. Grases · J. Cryst. Growth · 1989 · 94 · 50710.1016/0022-0248(89)90028-6 ↗
23. Atakan · Int. Urol. Nephrol. · 2007 · 39 · 35110.1007/s11255-006-9050-4 ↗
24. Berg · Urol. Res. · 1976 · 4 · 16110.1007/BF00262349 ↗
25. Davis · Science · 2000 · 290 · 113410.1126/science.290.5494.1134 ↗
26. Shaltout · Biol. Trace Elem. Res. · 2021 · 199 · 285810.1007/s12011-020-02424-0 ↗
27. Galassini · Nucl. Instrum. Methods Phys. Res., Sect. B · 1989 · 43 · 55610.1016/0168-583X(89)90405-9 ↗
28. Pineda-Vargas · Radiat. Phys. Chem. · 2004 · 71 · 94710.1016/j.radphyschem.2004.04.125 ↗
29. Bazin · Urol. Res. · 2007 · 35 · 17910.1007/s00240-007-0099-z ↗
30. Keshavarzi · Environ. Geochem. Health · 2015 · 37 · 37710.1007/s10653-014-9654-z ↗
31. Yen · Biol. Trace Elem. Res. · 2018 · 185 · 26610.1007/s12011-018-1253-x ↗
32. Templeton · Sci. Total Environ. · 1994 · 148 · 24310.1016/0048-9697(94)90400-6 ↗
33. Heitland · Clin. Chim. Acta · 2006 · 365 · 31010.1016/j.cca.2005.09.013 ↗
34. Dargahi · J. Trace Elem. Med. Biol. · 2023 · 80 · 12727010.1016/j.jtemb.2023.127270 ↗
35. B.Zambelli and S.Ciurli , Interrelations between essential metal ions and human diseases , 2013 , pp. 321–35710.1007/978-94-007-7500-8_10 ↗
36. Nielsen · J. Nutr. · 1984 · 114 · 128010.1093/jn/114.7.1280 ↗
37. Lu · Teratology · 1979 · 19 · 13710.1002/tera.1420190202 ↗
38. Fabiano · Front. Plant Sci. · 2015 · 6 · 75410.3389/fpls.2015.00754 ↗
39. Vannini · Sci. Rep. · 2017 · 7 · 110.1038/srep45458 ↗
40. Guerra-López · J. Raman Spectrosc. · 2001 · 32 · 25510.1002/jrs.689 ↗
41. Guerra-López · J. Mol. Struct. · 2017 · 1137 · 72010.1016/j.molstruc.2017.02.076 ↗
42. Guerra-López · J. Solid State Chem. · 2018 · 267 · 9810.1016/j.jssc.2018.08.010 ↗
43. Akhtar · Clin. Chim. Acta · 2013 · 418 · 1210.1016/j.cca.2012.12.027 ↗
44. Ramaswamy · Nat. Rev. Urol. · 2015 · 12 · 54310.1038/nrurol.2015.208 ↗
45. He · J. Phys.: Condens. Matter · 2019 · 31 · 103001
46. Zhang · Adv. Mater. · 2017 · 29 · 170063910.1002/adma.201700639 ↗
47. Banner · Adv. Funct. Mater. · 2021 · 31 · 200773610.1002/adfm.202007736 ↗
48. He · IEEE Trans. NanoBiosci. · 2010 · 9 · 15610.1109/TNB.2010.2045510 ↗
49. Phillips · J. Comput. Chem. · 2005 · 26 · 178110.1002/jcc.20289 ↗
50. Jorgensen · J. Chem. Phys. · 1983 · 79 · 92610.1063/1.445869 ↗
51. Beglov · J. Chem. Phys. · 1994 · 100 · 905010.1063/1.466711 ↗
52. Won · J. Phys. Chem. A · 2012 · 116 · 1176310.1021/jp309150r ↗
53. Darden · J. Chem. Phys. · 1993 · 98 · 1008910.1063/1.464397 ↗
54. Rewatkar · Chem. Biochem. Eng. Q. · 2018 · 32 · 1110.15255/CABEQ.2016.953 ↗
55. Tazzoli · Am. Mineral. · 1980 · 65 · 327
56. Basso · Neues Jahrb. Mineral. · 1997 · 2 · 8410.1127/njmm/1997/1997/84 ↗
57. Sheng · J. Am. Soc. Nephrol. · 2005 · 16 · 190410.1681/ASN.2005040400 ↗
58. Jáuregui-Zúñiga · J. Plant Physiol. · 2005 · 162 · 118310.1016/j.jplph.2005.03.002 ↗
59. Berthoud · J. Chim. Phys. · 1912 · 10 · 62410.1051/jcp/1912100624 ↗
60. Valeton · Z. Kristallogr. – Cryst. Mater. · 1924 · 60 · 110.1524/zkri.1924.60.1.1 ↗
61. J. W.Mullin , Crystallization , Elsevier , 2001
62. G. G.Libowitz , in The Chemical Structure of Solids , Springer , 2012 , pp. 335–385
63. Chung · Nature · 2016 · 536 · 44610.1038/nature19062 ↗
64. Inada · J. Phys. Chem. A · 2002 · 106 · 678310.1021/jp0155314 ↗
65. D'Angelo · J. Am. Chem. Soc. · 2006 · 128 · 185310.1021/ja0562503 ↗
66. Dezfoli · Chem. Eng. Commun. · 2015 · 202 · 168510.1080/00986445.2014.970251 ↗
67. Katz · J. Am. Chem. Soc. · 1996 · 118 · 575210.1021/ja953943i ↗
68. Jakubowska · J. Chem. Eng. Data · 2010 · 55 · 187610.1021/je900889x ↗