journal article·2019

Different platinum crystal surfaces show very distinct protein denaturation capabilities

Shengtang Liu, Xiuhua Yin, Hong Zhou, Bo Zhou, Qiwen Shao, Zaixing Yang, Ruhong Zhou

Nanoscale· Volume 11· Issue 41
Publisher page

Abstract

Different platinum (Pt) surfaces of nanocrystals usually exhibit significant distinctions with regard to various biological, physical, and chemical characteristics, such as bio-recognition, surface wetting, and catalytic activities. In this study, we report for the first time that two shape-controlled Pt nanocrystals with the most common low-index surfaces, Pt(100) and Pt(111), show very dissimilar protein denaturation capabilities based on all-atom molecular dynamics simulations employing the widely used model protein, villin headpiece (HP35). We demonstrate that HP35 is well preserved on the Pt(100) crystal surface, whereas it is severely disrupted on the Pt(111) crystal surface. This surprising difference originates from the distinct water behavior in the first solvation shell (FSS) of the two Pt crystal surfaces. Within the FSS of the Pt(100) crystal surface, water molecules form a very compact and stable monolayer through a highly uniform rhombic hydrogen-bond network. This water monolayer prefers the adsorption of acidic residues (such as Glu and Asp) and acts as a shield to prevent other residues from directly coming into contact with the metal surface. On the other hand, the hydrogen bond network in the water monolayer in the FSS of the Pt(111) crystal surface is very sparse and quite defective, which makes it more vulnerable to the penetration of various residues, particularly those with planar side chains such as Phe, Trp and Arg due to strong dispersion interactions, leading to subsequent protein unfolding. The binding free energy calculations for some key amino acids on the two different crystal surfaces further uncover the molecular origin behind their distinct protein denaturation capability. Our study reveals the vital importance of interfacial water in determining the structure of proteins when binding to different metal crystal surfaces. The discovered molecular mechanisms may be helpful for the future development of a bio-assisted programmable synthetic strategy of sophisticated Pt nanostructures for biomedical applications.
Source: openalex_inverted_index · Quality: candidate unverified · Source record ↗

Research context

OpenAlex topics: nanoparticles nucleation surface interactions · Ion-surface interactions and analysis · Diatoms and Algae Research

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Institute of Quantitative Biology and Medicine

State Key Laboratory of Radiation Medicine and Protection

School of Radiation Medicine and Protection

Collaborative Innovation Center of Radiological Medicine of Jiangsu Higher Education Institutions

Soochow University

School of Electronic Engineering

Chengdu Technological University

Chengdu 611730

China

Funding

National Natural Science Foundation of China · Natural Science Foundation of Jiangsu Province · Priority Academic Program Development of Jiangsu Higher Education Institutions

References (62)

Show source-provided references
1. Hall · J. Med. Chem. · 2007 · 50 · 340310.1021/jm070280u ↗
2. Wheate · Coord. Chem. Rev. · 2003 · 241 · 13310.1016/S0010-8545(03)00050-X ↗
3. Wang · Nat. Rev. Drug Discovery · 2005 · 4 · 30710.1038/nrd1691 ↗
4. Johnstone · J. Am. Chem. Soc. · 2014 · 136 · 11610.1021/ja411742c ↗
5. Brook · Biomaterials · 2006 · 27 · 327410.1016/j.biomaterials.2006.01.027 ↗
6. Maharaj · Int. J. Health Serv. · 2008 · 38 · 9510.2190/HS.38.1.e ↗
7. Narayanan · Nano Lett. · 2004 · 4 · 134310.1021/nl0495256 ↗
8. Seker · Langmuir · 2007 · 23 · 789510.1021/la700446g ↗
9. Bratlie · Nano Lett. · 2007 · 7 · 309710.1021/nl0716000 ↗
10. Narayanan · J. Am. Chem. Soc. · 2004 · 126 · 719410.1021/ja0486061 ↗
11. Venu · Colloids Surf., A · 2011 · 384 · 73310.1016/j.colsurfa.2011.05.045 ↗
12. Deng · Biotechnol. Lett. · 2009 · 31 · 150510.1007/s10529-009-0040-3 ↗
13. Lengke · Langmuir · 2006 · 22 · 731810.1021/la060873s ↗
14. Forbes · Chem. Mater. · 2010 · 22 · 652410.1021/cm101389v ↗
15. Sarikaya · Nat. Mater. · 2003 · 2 · 57710.1038/nmat964 ↗
16. Tamerler · Acta Biomater. · 2007 · 3 · 28910.1016/j.actbio.2006.10.009 ↗
17. Weiner · J. Mater. Chem. · 1997 · 7 · 68910.1039/a604512j ↗
18. Chiu · Nat. Chem. · 2011 · 3 · 39310.1038/nchem.1025 ↗
19. Ge · Proc. Natl. Acad. Sci. U. S. A. · 2011 · 108 · 1696810.1073/pnas.1105270108 ↗
20. Gu · Nanoscale · 2019 · 11 · 182710.1039/C8NR06203J ↗
21. Hughes · Langmuir · 2017 · 33 · 374210.1021/acs.langmuir.6b04558 ↗
22. Ghiringhelli · J. Am. Chem. Soc. · 2008 · 130 · 1346010.1021/ja804350v ↗
23. Penna · J. Am. Chem. Soc. · 2014 · 136 · 532310.1021/ja411796e ↗
24. Heinz · J. Am. Chem. Soc. · 2009 · 131 · 970410.1021/ja900531f ↗
25. Ramakrishnan · J. Chem. Inf. Model. · 2013 · 53 · 327310.1021/ci400630d ↗
26. Ramezani-Dakhel · Adv. Funct. Mater. · 2015 · 25 · 137410.1002/adfm.201404136 ↗
27. Chiu · Proc. Natl. Acad. Sci. U. S. A. · 2005 · 102 · 751710.1073/pnas.0502495102 ↗
28. Zuo · J. Phys. Chem. C · 2011 · 115 · 2332310.1021/jp208967t ↗
29. Lei · Proc. Natl. Acad. Sci. U. S. A. · 2007 · 104 · 492510.1073/pnas.0608432104 ↗
30. Heinz · J. Phys. Chem. C · 2008 · 112 · 1728110.1021/jp801931d ↗
31. Xu · J. Phys. Chem. C · 2015 · 119 · 2040910.1021/acs.jpcc.5b04237 ↗
32. Jorgensen · J. Chem. Phys. · 1983 · 79 · 92610.1063/1.445869 ↗
33. Van Der Spoel · J. Comput. Chem. · 2005 · 26 · 170110.1002/jcc.20291 ↗
34. Humphrey · J. Mol. Graphics Modell. · 1996 · 14 · 3310.1016/0263-7855(96)00018-5 ↗
35. Mackerell · J. Comput. Chem. · 2004 · 25 · 140010.1002/jcc.20065 ↗
36. Gu · Sci. Rep. · 2015 · 5 · 1088610.1038/srep10886 ↗
37. Stirnemann · Proc. Natl. Acad. Sci. U. S. A. · 2014 · 111 · 341310.1073/pnas.1400752111 ↗
38. B. G. Fitch , A.Rayshubskiy , M.Eleftheriou , T. J.Christopher Ward , M.Giampaga , Y.Zhestkov , M. C.Pitman , F.Suits , A.Grossfield , J.Pitera , W.Swope , R. H.Zhou , S.Feller and R. S.Germain , Blue Matter: Strong scaling of molecular dynamics on Blue Gene/L , Springer , Berlin Heidelberg , 2006
39. Guo · Nanoscale · 2014 · 6 · 280010.1039/c3nr02505e ↗
40. Kaminski · J. Comput. Chem. · 2003 · 24 · 26710.1002/jcc.10170 ↗
41. Xia · Sci. Rep. · 2012 · 2 · 56910.1038/srep00569 ↗
42. Bussi · J. Chem. Phys. · 2007 · 126 · 01410110.1063/1.2408420 ↗
43. Parrinello · J. Appl. Phys. · 1981 · 52 · 718210.1063/1.328693 ↗
44. Darden · J. Chem. Phys. · 1993 · 98 · 1008910.1063/1.464397 ↗
45. Hess · J. Comput. Chem. · 1997 · 18 · 146310.1002/(SICI)1096-987X(199709)18:12<1463::AID-JCC4>3.0.CO;2-H ↗
46. Miyamoto · J. Comput. Chem. · 1992 · 13 · 95210.1002/jcc.540130805 ↗
47. Hub · J. Chem. Theory Comput. · 2010 · 6 · 371310.1021/ct100494z ↗
48. Kirkwood · J. Chem. Phys. · 1935 · 3 · 30010.1063/1.1749657 ↗
49. Efron · Ann. Stat. · 1979 · 7 · 110.1214/aos/1176344552 ↗
50. Balamurugan · J. Phys. Chem. B · 2010 · 114 · 1404810.1021/jp106177n ↗
51. Liu · J. Chem. Phys. · 2014 · 141 · 22D52010.1063/1.4901113 ↗
52. Gu · Sci. Rep. · 2015 · 5 · 1087310.1038/srep10873 ↗
53. Limmer · Proc. Natl. Acad. Sci. U. S. A. · 2013 · 110 · 420010.1073/pnas.1301596110 ↗
54. Naderian · J. Chem. Phys. · 2016 · 145 · 09470310.1063/1.4961870 ↗
55. Nie · Phys. Rev. Lett. · 2010 · 105 · 02610210.1103/PhysRevLett.105.026102 ↗
56. Gross · J. Electrochem. Soc. · 2014 · 161 · E301510.1149/2.003408jes ↗
57. Spohr · J. Phys. Chem. · 1989 · 93 · 617110.1021/j100353a043 ↗
58. Xu · J. Phys. Chem. Lett. · 2016 · 7 · 54110.1021/acs.jpclett.5b02748 ↗
59. Raghavan · Chem. Phys. Lett. · 1991 · 177 · 42610.1016/0009-2614(91)85078-B ↗
60. Garcia-Araez · J. Phys. Chem. C · 2009 · 113 · 929010.1021/jp900792q ↗
61. Carrasco · Nat. Mater. · 2012 · 11 · 66710.1038/nmat3354 ↗
62. Huang · Coord. Chem. Rev. · 2015 · 285 · 10910.1016/j.ccr.2014.10.003 ↗