journal article·2024Open access

Hybrid quantum-classical polarizability model for single molecule biosensing

Ekaterina Zossimova, Johannes Fiedler, Frank Vollmer, Michael Walter

Nanoscale· Volume 16· Issue 11

Abstract

Optical whispering gallery mode biosensors are able to detect single molecules through effects of their polarizability. We address the factors that affect the polarizability of amino acids, which are the building blocks of life, via electronic structure theory. Amino acids are detected in aqueous environments, where their polarizability is different compared to the gasphase due to solvent effects. Solvent effects include structural changes, protonation and the local field enhancement through the solvent (water). We analyse the impact of these effects and find that all contribute to an increased effective polarizability in the solvent. We also address the excess polarizability relative to the displaced water cavity and develop a hybrid quantum-classical model that is in good agreement with self-consistent calculations. We apply our model to calculate the excess polarizability of 20 proteinogenic amino acids and determine the minimum resolution required to distinguish the different molecules and their ionised conformers based on their polarizability.
Source: europepmc · Quality: candidate unverified · Source record ↗

Research context

OpenAlex topics: Photonic and Optical Devices · Mechanical and Optical Resonators · Molecular Junctions and Nanostructures

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Department of Physics and Astronomy, Living Systems Institute, University of Exeter, EX4 4QD, Exeter, UK

Freiburg Center for Interactive Materials and Bioinspired Technologies (FIT), University of Freiburg, D-79110 Freiburg, Germany

Department of Physics and Technology, University of Bergen, Allégaten 55, 5007 Bergen, Norway

Cluster of Excellence livMatS @ FIT, Freiburg, Germany

Fraunhofer IWM, MikroTribologie Centrum μTC, Freiburg, Germany

Funding

Engineering and Physical Sciences Research Council · H2020 Marie Skłodowska-Curie Actions · Deutsche Forschungsgemeinschaft

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