journal article·2021

Stacking of nanorings to generate nanotubes for acceleration of protein refolding

N. Kameta, W. Ding

Nanoscale· Volume 13· Issue 3
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Abstract

Self-assembly and photoisomerization of azobenzene-based amphiphilic molecules produced nanorings with an inner diameter of 25 nm and lengths of <40 nm. The nanorings, which consisted of a single bilayer membrane of the amphiphiles, retained their morphology in the presence of a stacking inhibitor; whereas in the absence of the inhibitor, the nanorings stacked into short nanotubes (<500 nm). When subjected to mild heat treatment, these nanotubes joined end-to-end to form nanotubes with lengths of several tens of micrometers. The nanorings and the short and long nanotubes were able to encapsulate proteins and thereby suppress aggregation induced by thermal denaturation. In addition, the nanotubes accelerated refolding of denatured proteins by encapsulating them and then releasing them into the bulk solution; refolding occurred simultaneously with release. In contrast, the nanorings did not accelerate protein refolding. Refolding efficiency increased with increasing nanotube length, indicating that the re-aggregation of the proteins was strictly inhibited by lowering the concentration of the proteins in the bulk solution as the result of the slow release from the longer nanotubes. The migration of the proteins through the long, narrow nanochannels during the release process will also contribute to refolding.
Source: openalex_inverted_index · Quality: candidate unverified · Source record ↗

Research context

OpenAlex topics: Supramolecular Self-Assembly in Materials · Silk-based biomaterials and applications · Bacteriophages and microbial interactions

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Nanomaterials Research Institute

Department of Materials and Chemistry

National Institute of Advanced Industrial Science and Technology (AIST)

Tsukuba

Japan

Funding

Japan Society for the Promotion of Science

References (100+)

Show source-provided references
1. Chen · Nature · 1994 · 371 · 26110.1038/371261a0 ↗
2. Hunt · Nature · 1996 · 379 · 3710.1038/379037a0 ↗
3. Mayhew · Nature · 1996 · 379 · 42010.1038/379420a0 ↗
4. Xu · Nature · 1997 · 388 · 74110.1038/41944 ↗
5. Keskin · Biochemistry · 2002 · 41 · 49110.1021/bi011393x ↗
6. Nishimura · Bioconjugate Chem. · 2020 · 31 · 125910.1021/acs.bioconjchem.0c00133 ↗
7. Ma · Adv. Mater. · 2020 · 32 · 180594510.1002/adma.201805945 ↗
8. Hanpanich · Biomaterials · 2020 · 254 · 12015010.1016/j.biomaterials.2020.120150 ↗
9. Fernandez-Fernandez · Nanotechnology · 2016 · 27 · 32400410.1088/0957-4484/27/32/324004 ↗
10. Buchner · Biotechnology · 1991 · 9 · 157
11. Tsumoto · J. Immunol. Methods · 1998 · 219 · 11910.1016/S0022-1759(98)00127-6 ↗
12. Arakawa · Biochem. Biophys. Res. Commun. · 2003 · 304 · 14810.1016/S0006-291X(03)00578-3 ↗
13. Shiraki · Eur. J. Biochem. · 2004 · 271 · 324210.1111/j.1432-1033.2004.04257.x ↗
14. Hamada · J. Biotechnol. · 2007 · 130 · 15310.1016/j.jbiotec.2007.03.003 ↗
15. Matsuoka · Biotechnol. Prog. · 2009 · 25 · 151510.1002/btpr.245 ↗
16. Yamaguchi · Biotechnol. J. · 2013 · 8 · 1710.1002/biot.201200025 ↗
17. Tandon · J. Biol. Chem. · 1986 · 261 · 561510.1016/S0021-9258(18)66759-6 ↗
18. Zardeneta · Anal. Biochem. · 1994 · 223 · 110.1006/abio.1994.1537 ↗
19. Hashimoto · Biotechnol. Bioeng. · 1998 · 57 · 62010.1002/(SICI)1097-0290(19980305)57:5<620::AID-BIT14>3.0.CO;2-F ↗
20. Goto · Biotechnol. Prog. · 2000 · 16 · 107910.1021/bp000073m ↗
21. Gull · Langmuir · 2009 · 25 · 1168610.1021/la901639h ↗
22. Potempa · Protein J. · 2010 · 29 · 45710.1007/s10930-010-9279-8 ↗
23. Wu · Phys. Chem. Chem. Phys. · 2011 · 13 · 342910.1039/c0cp01184c ↗
24. Zamudio-Prieto · Biochim. Biophys. Acta · 2014 · 1844 · 129910.1016/j.bbapap.2014.04.009 ↗
25. Yoshimoto · Biomacromolecules · 2003 · 4 · 153010.1021/bm015662a ↗
26. Zhao · RSC Adv. · 2017 · 7 · 5368910.1039/C7RA11558J ↗
27. Semenyuk · Int. J. Biol. Macromol. · 2019 · 121 · 53610.1016/j.ijbiomac.2018.10.031 ↗
28. Kuboi · Biotechnol. Prog. · 1997 · 13 · 82810.1021/bp970104m ↗
29. Yoshimoto · Biotechnol. Prog. · 1999 · 15 · 48010.1021/bp990050b ↗
30. Connolly · Proc. Natl. Acad. Sci. U. S. A. · 2006 · 103 · 1790310.1073/pnas.0608678103 ↗
31. Geng · J. Chromatogr. B: Anal. Technol. Biomed. Life Sci. · 2007 · 849 · 6910.1016/j.jchromb.2006.10.068 ↗
32. Al Kayal · Soft Matter · 2012 · 8 · 911510.1039/c2sm25992c ↗
33. Bharmoria · J. Phys. Chem. B · 2014 · 118 · 11510.1021/jp4102042 ↗
34. Yoshimoto · Langmuir · 2015 · 31 · 76210.1021/la504126b ↗
35. Rozema · J. Am. Chem. Soc. · 1995 · 117 · 237310.1021/ja00113a036 ↗
36. Rozema · Biochemistry · 1996 · 35 · 1576010.1021/bi961638j ↗
37. Rozema · J. Biol. Chem. · 1996 · 271 · 347810.1074/jbc.271.7.3478 ↗
38. Yamamoto · Bioprocess Biosyst. Eng. · 2010 · 33 · 17110.1007/s00449-009-0374-1 ↗
39. Han · Biochem. Eng. J. · 2013 · 77 · 1510.1016/j.bej.2013.04.027 ↗
40. Gull · RSC Adv. · 2017 · 7 · 2845210.1039/C6RA21528A ↗
41. Daugherty · J. Biol. Chem. · 1998 · 273 · 3396110.1074/jbc.273.51.33961 ↗
42. Mannen · J. Biosci. Bioeng. · 2001 · 91 · 40310.1016/S1389-1723(01)80159-6 ↗
43. Li · Protein Expression Purif. · 2006 · 45 · 7210.1016/j.pep.2005.05.006 ↗
44. Esmaeili · Protein J. · 2008 · 27 · 33410.1007/s10930-008-9142-3 ↗
45. Saenger · Chem. Rev. · 1998 · 30 · 178710.1021/cr9700181 ↗
46. Sivakama Sundari · FEBS Lett. · 1999 · 443 · 21510.1016/S0014-5793(98)01720-7 ↗
47. Machida · FEBS Lett. · 2000 · 486 · 13110.1016/S0014-5793(00)02258-4 ↗
48. Lu · Biochem. Eng. J. · 2006 · 27 · 33610.1016/j.bej.2005.08.035 ↗
49. Laslo · J. Biotechnol. · 2009 · 140 · 16210.1016/j.jbiotec.2009.01.023 ↗
50. Lee · Polym. Chem. · 2015 · 6 · 344310.1039/C5PY00121H ↗
51. Nomura · FEBS Lett. · 2003 · 553 · 27110.1016/S0014-5793(03)01028-7 ↗
52. Hirakura · Biomacromolecules · 2004 · 5 · 180410.1021/bm049860o ↗
53. Morimoto · Biomacromolecules · 2005 · 6 · 182910.1021/bm050156x ↗
54. Morimoto · J. Biotechnol. · 2009 · 140 · 24610.1016/j.jbiotec.2009.01.013 ↗
55. Sasaki · Polym. J. · 2010 · 42 · 82310.1038/pj.2010.73 ↗
56. Takeda · RSC Adv. · 2013 · 3 · 2571610.1039/c3ra44572k ↗
57. Kuboi · J. Chromatogr. B: Biomed. Sci. Appl. · 2000 · 743 · 21510.1016/S0378-4347(00)00062-1 ↗
58. Yoshimoto · Biomacromolecules · 2003 · 4 · 153010.1021/bm015662a ↗
59. Muraoka · Angew. Chem., Int. Ed. · 2013 · 52 · 243010.1002/anie.201206563 ↗
60. Muraoka · Biochem. Eng. J. · 2014 · 86 · 4110.1016/j.bej.2014.03.001 ↗
61. Sadhukhan · Chem. Commun. · 2015 · 51 · 845710.1039/C4CC10301G ↗
62. Kinbara · Polym. J. · 2018 · 50 · 68910.1038/s41428-018-0074-2 ↗
63. Martin · Langmuir · 2016 · 32 · 588110.1021/acs.langmuir.6b01271 ↗
64. Ganguli · J. Am. Chem. Soc. · 2009 · 131 · 654910.1021/ja900786z ↗
65. Martin · Langmuir · 2015 · 31 · 33810.1021/la503643q ↗
66. Semenyuk · Biochem. Biophys. Res. Commun. · 2017 · 489 · 20010.1016/j.bbrc.2017.05.128 ↗
67. Shimizu · Colloids Surf., A · 1999 · 153 · 42110.1016/S0927-7757(98)00625-6 ↗
68. Shimizu · Biotechnol. Prog. · 2000 · 16 · 24810.1021/bp000008c ↗
69. Cavalieri · Soft Matter · 2007 · 3 · 71810.1039/b618779j ↗
70. Huang · Angew. Chem., Int. Ed. · 2014 · 53 · 898510.1002/anie.201400735 ↗
71. Wang · Langmuir · 2016 · 32 · 273710.1021/acs.langmuir.6b00356 ↗
72. Nakamoto · J. Am. Chem. Soc. · 2016 · 138 · 428210.1021/jacs.5b12600 ↗
73. Ma · ACS Nano · 2017 · 11 · 1054910.1021/acsnano.7b05947 ↗
74. Yang · Adv. Sci. · 2019 · 6 · 190184410.1002/advs.201901844 ↗
75. Simard · J. Biomed. Nanotechnol. · 2005 · 1 · 34110.1166/jbn.2005.037 ↗
76. Wu · Biochim. Biophys. Acta, Proteins Proteomics · 2008 · 1784 · 169410.1016/j.bbapap.2008.06.008 ↗
77. De · Chem. Commun. · 2008 · 350410.1039/b805242e ↗
78. Raghava · J. Mater. Chem. · 2009 · 19 · 283010.1039/b817306k ↗
79. Badruddoza · J. Colloid Interface Sci. · 2010 · 346 · 33710.1016/j.jcis.2010.03.004 ↗
80. Ghaeidamini · J. Phys. Chem. B · 2018 · 122 · 990710.1021/acs.jpcb.8b07226 ↗
81. Ghosh · Int. J. Biol. Macromol. · 2019 · 138 · 95810.1016/j.ijbiomac.2019.07.103 ↗
82. Ravindra · J. Am. Chem. Soc. · 2004 · 126 · 1222410.1021/ja046900n ↗
83. Chiku · Anal. Biochem. · 2006 · 348 · 30710.1016/j.ab.2005.10.032 ↗
84. Wang · Langmuir · 2007 · 23 · 573510.1021/la063507h ↗
85. Togashi · Biotechnol. Prog. · 2009 · 25 · 20010.1002/btpr.107 ↗
86. Nara · Biotechnol. Prog. · 2009 · 25 · 107110.1002/btpr.221 ↗
87. Nara · Colloids Surf., B · 2009 · 68 · 6810.1016/j.colsurfb.2008.09.012 ↗
88. Nabati · J. Mol. Catal. B: Enzym. · 2011 · 70 · 1710.1016/j.molcatb.2011.01.014 ↗
89. Aida · Science · 2012 · 335 · 81310.1126/science.1205962 ↗
90. Chapman · Chem. Soc. Rev. · 2012 · 41 · 602310.1039/c2cs35172b ↗
91. Adler-Abramovich · Chem. Soc. Rev. · 2014 · 43 · 688110.1039/C4CS00164H ↗
92. Hamley · Angew. Chem., Int. Ed. · 2014 · 53 · 686610.1002/anie.201310006 ↗
93. Barclay · Chem. Rev. · 2014 · 114 · 1021710.1021/cr400085m ↗
94. Liu · Chem. Rev. · 2015 · 115 · 730410.1021/cr500671p ↗
95. Beingessner · RSC Adv. · 2016 · 6 · 7582010.1039/C6RA16315G ↗
96. Komatsu · Chem. Lett. · 2020 · 49 · 124510.1246/cl.200433 ↗
97. Shimizu · Chem. Rev. · 2020 · 120 · 234710.1021/acs.chemrev.9b00509 ↗
98. Shimizu · Langmuir · 2016 · 32 · 1224210.1021/acs.langmuir.6b01632 ↗
99. Kameta · ACS Omega · 2017 · 2 · 614310.1021/acsomega.7b00838 ↗
100. Kameta · Adv. Biosyst. · 2018 · 2 · 170021410.1002/adbi.201700214 ↗