Weak carbohydrate–carbohydrate interactions in membrane adhesion are fuzzy and generic
Source abstract
Abstract
Carbohydrates such as the trisaccharide motif LeX are key constituents of cell surfaces. Despite intense research, the interactions between carbohydrates of apposing cells or membranes are not well understood. In this article, we investigate carbohydrate-carbohydrate interactions in membrane adhesion as well as in solution with extensive atomistic molecular dynamics simulations that exceed the simulation times of previous studies by orders of magnitude. For LeX, we obtain association constants of soluble carbohydrates, adhesion energies of lipid-anchored carbohydrates, and maximally sustained forces of carbohydrate complexes in membrane adhesion that are in good agreement with experimental results in the literature. Our simulations thus appear to provide a realistic, detailed picture of LeX-LeX interactions in solution and during membrane adhesion. In this picture, the LeX-LeX interactions are fuzzy, i.e. LeX pairs interact in a large variety of short-lived, bound conformations. For the synthetic tetrasaccharide Lac 2, which is composed of two lactose units, we observe similarly fuzzy interactions and obtain association constants of both soluble and lipid-anchored variants that are comparable to the corresponding association constants of LeX. The fuzzy, weak carbohydrate-carbohydrate interactions quantified in our simulations thus appear to be a generic feature of small, neutral carbohydrates such as LeX and Lac 2.
Source: openalex_inverted_index · Quality: candidate unverified · Source record ↗
Research context
OpenAlex topics: Polymer Surface Interaction Studies · Lipid Membrane Structure and Behavior · Supramolecular Self-Assembly in Materials
SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.
Affiliations
Max Planck Institute of Colloids and Interfaces
Department of Theory and Bio-Systems
14476 Potsdam
Germany
Department of Biomaterials
Technische Universität Darmstadt
Funding
Deutsche Forschungsgemeinschaft
References (70)
Show source-provided references
1. B. Alberts , A.Johnson , J.Lewis , D.Morgan , M.Raff , K.Roberts , P.Walter , J.Wilson and T.Hunt , Molecular Biology of the Cell , Garland Science , New York , 6th edn, 2014
2. Varki · Nature · 2007 · 446 · 102310.1038/nature05816 ↗
3. Dennis · Cell · 2009 · 139 · 122910.1016/j.cell.2009.12.008 ↗
4. Schnaar · Arch. Biochem. Biophys. · 2004 · 426 · 16310.1016/j.abb.2004.02.019 ↗
5. Liu · Nat. Rev. Cancer · 2005 · 5 · 2910.1038/nrc1527 ↗
6. Arnaud · Chem. Soc. Rev. · 2013 · 42 · 479810.1039/c2cs35435g ↗
7. Varki · Glycobiology · 2017 · 27 · 310.1093/glycob/cww086 ↗
8. Poole · Nat. Rev. Microbiol. · 2018 · 16 · 44010.1038/s41579-018-0007-2 ↗
9. Eggens · J. Biol. Chem. · 1989 · 264 · 947610.1016/S0021-9258(18)60556-3 ↗
10. Kojima · Glycoconjugate J. · 1994 · 11 · 23810.1007/BF00731224 ↗
11. Handa · Biochem. Biophys. Res. Commun. · 2007 · 358 · 24710.1016/j.bbrc.2007.04.101 ↗
12. Misevic · J. Biol. Chem. · 1987 · 262 · 587010.1016/S0021-9258(18)45655-4 ↗
13. de la Fuente · Angew. Chem., Int. Ed. · 2001 · 40 · 225710.1002/1521-3773(20010618)40:12<2257::AID-ANIE2257>3.0.CO;2-S ↗
14. Hernaiz · Angew. Chem., Int. Ed. · 2002 · 41 · 155410.1002/1521-3773(20020503)41:9<1554::AID-ANIE1554>3.0.CO;2-3 ↗
15. de la Fuente · J. Am. Chem. Soc. · 2005 · 127 · 619210.1021/ja0431354 ↗
16. Tromas · Angew. Chem., Int. Ed. · 2001 · 40 · 305210.1002/1521-3773(20010817)40:16<3052::AID-ANIE3052>3.0.CO;2-Q ↗
17. Bucior · J. Cell Biol. · 2004 · 165 · 52910.1083/jcb.200309005 ↗
18. Lorenz · J. Am. Chem. Soc. · 2012 · 134 · 332610.1021/ja210304j ↗
19. Witt · Biophys. J. · 2016 · 110 · 158210.1016/j.bpj.2016.03.006 ↗
20. Gourier · Angew. Chem., Int. Ed. · 2005 · 44 · 168310.1002/anie.200461224 ↗
21. Kunze · Sci. Rep. · 2013 · 3 · 145210.1038/srep01452 ↗
22. Yu · Biochemistry · 1998 · 37 · 154010.1021/bi971010o ↗
23. Schneck · Biophys. J. · 2011 · 100 · 215110.1016/j.bpj.2011.03.011 ↗
24. Latza · Biophys. J. · 2020 · 118 · 160210.1016/j.bpj.2020.02.003 ↗
25. Day · Proc. Natl. Acad. Sci. U. S. A. · 2015 · 112 · E726610.1073/pnas.1421082112 ↗
26. Yu · Angew. Chem., Int. Ed. · 2019 · 58 · 1312710.1002/anie.201906577 ↗
27. Pincet · Biophys. J. · 2001 · 80 · 135410.1016/S0006-3495(01)76108-5 ↗
28. Patel · Biophys. J. · 2007 · 93 · 74110.1529/biophysj.106.100891 ↗
29. Schneider · J. Phys. Chem. B · 2001 · 105 · 517810.1021/jp0028103 ↗
30. Sauter · J. Chem. Theory Comput. · 2016 · 12 · 437510.1021/acs.jctc.6b00295 ↗
31. Lay · J. Chem. Theory Comput. · 2016 · 12 · 140110.1021/acs.jctc.5b01136 ↗
32. Woods · Chem. Rev. · 2018 · 118 · 800510.1021/acs.chemrev.8b00032 ↗
33. Gourmala · J. Mol. Struct.: THEOCHEM · 2007 · 821 · 2210.1016/j.theochem.2007.06.027 ↗
34. Luo · J. Mol. Model. · 2008 · 14 · 90110.1007/s00894-008-0325-9 ↗
35. Santos · ChemBioChem · 2009 · 10 · 51110.1002/cbic.200800548 ↗
36. de la Fuente · Glycoconjugate J. · 2004 · 21 · 14910.1023/B:GLYC.0000044846.80014.cb ↗
37. Sauter · J. Chem. Theory Comput. · 2015 · 11 · 176510.1021/ct500924f ↗
38. Salomon-Ferrer · J. Chem. Theory Comput. · 2013 · 9 · 387810.1021/ct400314y ↗
39. Le Grand · Comput. Phys. Commun. · 2013 · 184 · 37410.1016/j.cpc.2012.09.022 ↗
40. Tompa · Trends Biochem. Sci. · 2008 · 33 · 210.1016/j.tibs.2007.10.003 ↗
41. Uversky · Anal. Chem. · 2012 · 84 · 209610.1021/ac203096k ↗
42. Kirschner · J. Comput. Chem. · 2008 · 29 · 62210.1002/jcc.20820 ↗
43. Dickson · J. Chem. Theory Comput. · 2014 · 10 · 86510.1021/ct4010307 ↗
44. Helfrich · Z. Naturforsch., A: Phys., Phys. Chem., Kosmophys. · 1978 · 33 · 30510.1515/zna-1978-0308 ↗
45. Lipowsky · Phys. Rev. Lett. · 1986 · 56 · 254110.1103/PhysRevLett.56.2541 ↗
46. Steinkühler · J. Cell Sci. · 2019 · 132 · jcs21677010.1242/jcs.216770 ↗
47. Weikl · Annu. Rev. Phys. Chem. · 2018 · 69 · 52110.1146/annurev-physchem-052516-050637 ↗
48. Simson · Biophys. J. · 1998 · 74 · 51410.1016/S0006-3495(98)77808-7 ↗
49. Popescu · Phys. Rev. Lett. · 2006 · 97 · 21810110.1103/PhysRevLett.97.218101 ↗
50. Betz · Proc. Natl. Acad. Sci. U. S. A. · 2009 · 106 · 1532010.1073/pnas.0904614106 ↗
51. Nagle · Faraday Discuss. · 2013 · 161 · 1110.1039/C2FD20121F ↗
52. Dimova · Adv. Colloid Interface Sci. · 2014 · 208 · 22510.1016/j.cis.2014.03.003 ↗
53. Xu · J. Chem. Phys. · 2015 · 143 · 24313610.1063/1.4936134 ↗
54. Geyer · Angew. Chem., Int. Ed. · 2000 · 39 · 324610.1002/1521-3773(20000915)39:18<3245::AID-ANIE3245>3.0.CO;2-9 ↗
55. Nodet · J. Am. Chem. Soc. · 2007 · 129 · 908010.1021/ja0711056 ↗
56. Woods Group, GLYCAM Web, Complex Carbohydrate Research Center, University of Georgia, Athens, GA, 2005–2020, http://glycam.org
57. Salomon-Ferrer · Wiley Interdiscip. Rev.: Comput. Mol. Sci. · 2013 · 3 · 198
58. M. P. Allen and D. J.Tildesley , Computer simulation of liquids , Oxford University Press , 201710.1093/oso/9780198803195.001.0001 ↗
59. Miyamoto · J. Comput. Chem. · 1992 · 13 · 95210.1002/jcc.540130805 ↗
60. Ryckaert · J. Comput. Phys. · 1977 · 23 · 32710.1016/0021-9991(77)90098-5 ↗
61. Essmann · J. Chem. Phys. · 1995 · 103 · 857710.1063/1.470117 ↗
62. Darden · J. Chem. Phys. · 1993 · 98 · 1008910.1063/1.464397 ↗
63. Hu · Proc. Natl. Acad. Sci. U. S. A. · 2013 · 110 · 1528310.1073/pnas.1305766110 ↗
64. Kucerka · Biochim. Biophys. Acta, Biomembr. · 2011 · 1808 · 276110.1016/j.bbamem.2011.07.022 ↗
65. Jo · J. Comput. Chem. · 2008 · 29 · 185910.1002/jcc.20945 ↗
66. Berendsen · J. Chem. Phys. · 1984 · 81 · 368410.1063/1.448118 ↗
67. Anezo · J. Phys. Chem. B · 2003 · 107 · 942410.1021/jp0348981 ↗
68. Kucerka · J. Membr. Biol. · 2005 · 208 · 19310.1007/s00232-005-7006-8 ↗
69. Filippov · Langmuir · 2003 · 19 · 639710.1021/la034222x ↗
70. Morishita · J. Chem. Phys. · 2000 · 113 · 297610.1063/1.1287333 ↗