journal article·2012

Functional self-assembled DNA nanostructures for molecular recognition

Xiaojuan Zhang, Vamsi K. Yadavalli

Nanoscale· Volume 4· Issue 7
Publisher page

Abstract

Nucleic acids present a wonderful toolkit of structural motifs for nanoconstruction. Functional DNA nanostructures can enable protein recognition by the use of aptamers attached to a basic core shape formed by DNA self-assembly. Here, we present a facile, programmable strategy for the assembly of discrete aptamer-tagged DNA shapes and nanostructures that can function for molecular recognition and binding in an aqueous environment. These nanostructures, presented here to bind two different protein targets, are easily synthesized in large numbers, and are portable and stable over long periods of time. This construction modality can facilitate on-demand production of libraries of diverse shapes to recognize and bind proteins or catalyze reactions via functional nucleic acid tags.
Source: openalex_inverted_index · Quality: baseline

Research context

OpenAlex topics: Advanced biosensing and bioanalysis techniques · DNA and Nucleic Acid Chemistry · Biosensors and Analytical Detection

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

References (44)

Show source-provided references
1. Seeman · Nature · 2003 · 421 · 42710.1038/nature01406 ↗
2. Aldaye · Science · 2008 · 321 · 179510.1126/science.1154533 ↗
3. Rothemund · Nature · 2006 · 440 · 29710.1038/nature04586 ↗
4. Jaeger · Curr. Opin. Struct. Biol. · 2006 · 16 · 53110.1016/j.sbi.2006.07.001 ↗
5. Lin · Biochemistry · 2009 · 48 · 166310.1021/bi802324w ↗
6. He · Nature · 2008 · 452 · 19810.1038/nature06597 ↗
7. He · Angew. Chem., Int. Ed. · 2005 · 44 · 669410.1002/anie.200502193 ↗
8. Lin · ChemPhysChem · 2006 · 7 · 164110.1002/cphc.200600260 ↗
9. Hansen · J. Am. Chem. Soc. · 2010 · 132 · 1448110.1021/ja104456p ↗
10. Chhabra · J. Am. Chem. Soc. · 2007 · 129 · 1030410.1021/ja072410u ↗
11. Yan · Science · 2003 · 301 · 188210.1126/science.1089389 ↗
12. Sanderson · Nature · 2010 · 464 · 15810.1038/464158a ↗
13. Wilner · Nat. Nanotechnol. · 2009 · 4 · 24910.1038/nnano.2009.50 ↗
14. Nimjee · Annu. Rev. Med. · 2005 · 56 · 55510.1146/annurev.med.56.062904.144915 ↗
15. Breaker · Nature · 2004 · 432 · 83810.1038/nature03195 ↗
16. Ellington · Nature · 1990 · 346 · 81810.1038/346818a0 ↗
17. Shoji · J. Am. Chem. Soc. · 2007 · 129 · 145610.1021/ja067098n ↗
18. Rinker · Nat. Nanotechnol. · 2008 · 3 · 41810.1038/nnano.2008.164 ↗
19. Grabow · Nano Lett. · 2011 · 11 · 87810.1021/nl104271s ↗
20. Zhang · Chem. Commun. · 2010 · 46 · 679210.1039/c0cc02363a ↗
21. Wong · Small · 2011 · 7 · 142710.1002/smll.201100140 ↗
22. Shen · J. Am. Chem. Soc. · 2009 · 131 · 666010.1021/ja901407j ↗
23. Sun · J. Am. Chem. Soc. · 2009 · 131 · 1324810.1021/ja906475w ↗
24. Zadeh · J. Comput. Chem. · 2011 · 32 · 17010.1002/jcc.21596 ↗
25. Tasset · J. Mol. Biol. · 1997 · 272 · 68810.1006/jmbi.1997.1275 ↗
26. Park · Nano Lett. · 2005 · 5 · 72910.1021/nl050175c ↗
27. Lyubchenko · J. Biomol. Struct. Dyn. · 1992 · 10 · 58910.1080/07391102.1992.10508670 ↗
28. Chworos · Science · 2004 · 306 · 206810.1126/science.1104686 ↗
29. Severcan · Nano Lett. · 2009 · 9 · 127010.1021/nl900261h ↗
30. Chang · ACS Nano · 2011 · 5 · 615610.1021/nn200693a ↗
31. He · J. Am. Chem. Soc. · 2005 · 127 · 1220210.1021/ja0541938 ↗
32. Lee · Curr. Opin. Chem. Biol. · 2006 · 10 · 28210.1016/j.cbpa.2006.03.015 ↗
33. Lin · Angew. Chem., Int. Ed. · 2006 · 45 · 529610.1002/anie.200600438 ↗
34. Hermann · Science · 2000 · 287 · 82010.1126/science.287.5454.820 ↗
35. Savran · Anal. Chem. · 2004 · 76 · 319410.1021/ac049859f ↗
36. Dahirel · Phys. Rev. Lett. · 2009 · 102 · 22810110.1103/PhysRevLett.102.228101 ↗
37. Zhang · Analyst · 2010 · 135 · 201410.1039/c0an00200c ↗
38. Krausch · Biomacromolecules · 2005 · 6 · 125210.1021/bm0494489 ↗
39. Chakrabarty · Polymer · 2010 · 51 · 575610.1016/j.polymer.2010.09.053 ↗
40. Bunka · Nat. Rev. Microbiol. · 2006 · 4 · 58810.1038/nrmicro1458 ↗
41. Jayasena · Clin. Chem. · 1999 · 45 · 162810.1093/clinchem/45.9.1628 ↗
42. Song · TrAC, Trends Anal. Chem. · 2008 · 27 · 10810.1016/j.trac.2007.12.004 ↗
43. Cho · Annu. Rev. Anal. Chem. · 2009 · 2 · 12.1110.1146/annurev.anchem.1.031207.112851 ↗
44. Cho · Anal. Chim. Acta · 2006 · 564 · 8210.1016/j.aca.2005.12.038 ↗