journal article·2025

Dynamic nanostructures based on DNA self-assembly: from molecular switches to intelligent biomedical applications

Jiahui Wang, Hexin Yu, Xiangyuan Ouyang

Nanoscale· Volume 17· Issue 44
Publisher page

Abstract

DNA self-assembly technology, characterized by its molecular-level precision, programmability, and biocompatibility, has emerged as a fundamental tool for constructing dynamic nanostructures. In recent years, the integration of stimulus-responsive modules and dynamic regulatory mechanisms has effectively overcome the limitations of traditional static structures, enabling remote, reversible, and controllable regulation of nanoscale behaviors. It opens new possibilities for the interdisciplinary development of intelligent nanosystems with environmental responsiveness and adaptive capabilities. This article systematically reviews the latest research progress in dynamic DNA nanostructures over the past five years. Initially, the design principles and regulatory mechanisms are introduced, emphasizing the examination of strategies for conformational changes triggered by various stimuli, including light, pH, temperature, metal ions, and enzymes. Subsequently, the innovative applications of these dynamic structures in biomedicine and molecular computing are explored in greater detail. Finally, based on a summary of the current technical bottlenecks, we looked ahead to the future development directions of this technology in the field of precision medical interventions.
Source: openalex_inverted_index · Quality: candidate unverified · Source record ↗

Research context

OpenAlex topics: Advanced biosensing and bioanalysis techniques · DNA and Nucleic Acid Chemistry · Supramolecular Chemistry and Complexes

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Key Laboratory of Functional Supramolecular Structure and Materials, Key Laboratory of Synthetic and Natural Functional Molecule of Ministry of Education, College of Chemistry and Materials Science, Northwest University, Xi'an, Shaanxi 710127, P. R. China

State Key Laboratory of Chemo/Biosensing and Chemometrics, Hunan University, Changsha, Hunan 410082, China

Funding

National Natural Science Foundation of China · Hunan University

References (100+)

Show source-provided references
1. Watson · Nature · 1953 · 171 · 73710.1038/171737a0 ↗
2. Broker · J. Mol. Biol. · 1971 · 60 · 13110.1016/0022-2836(71)90453-0 ↗
3. Watson · Nature · 1953 · 171 · 96410.1038/171964b0 ↗
4. Seeman · Methods Mol. Biol. (Clifton, N.J.) · 2018 · 1811 · 110.1007/978-1-4939-8582-1_1 ↗
5. Seeman · J. Theor. Biol. · 1982 · 99 · 23710.1016/0022-5193(82)90002-9 ↗
6. Anastasiya · Cancers · 2023 · 15 · 215110.3390/cancers15072151 ↗
7. Jones · Science · 2015 · 347 · 126090110.1126/science.1260901 ↗
8. Winfree · Nature · 1998 · 394 · 53910.1038/28998 ↗
9. Rothemund · Nature · 2006 · 440 · 29710.1038/nature04586 ↗
10. Chen · Nature · 1991 · 350 · 63110.1038/350631a0 ↗
11. Shih · Nature · 2004 · 427 · 61810.1038/nature02307 ↗
12. Goodman · Science · 2005 · 310 · 166110.1126/science.1120367 ↗
13. Huang · ACS Appl. Bio Mater. · 2020 · 3 · 286110.1021/acsabm.9b01210 ↗
14. Conway · J. Am. Chem. Soc. · 2014 · 136 · 1298710.1021/ja506095n ↗
15. Liu · Nature · 2004 · 427 · 61510.1038/nature02310 ↗
16. Li · Expert Opin. Drug Delivery · 2023 · 20 · 151110.1080/17425247.2023.2276285 ↗
17. Lu · Trends Anal. Chem. · 2022 · 148 · 11653310.1016/j.trac.2022.116533 ↗
18. Hu · Colloids Surf., B · 2024 · 240 · 11398210.1016/j.colsurfb.2024.113982 ↗
19. Qi · Nano Today · 2023 · 54 · 10212710.1016/j.nantod.2023.102127 ↗
20. Chen · Front. Bioeng. Biotechnol. · 2021 · 9 · 78223710.3389/fbioe.2021.782237 ↗
21. Valatabar · J. Nanobiotechnol. · 2024 · 22 · 38610.1186/s12951-024-02648-5 ↗
22. Jahnke · Nucleic Acids Res. · 2021 · 49 · 418610.1093/nar/gkab201 ↗
23. Zhang · Angew. Chem., Int. Ed. · 2022 · 61 · e20211765810.1002/anie.202117658 ↗
24. Zhou · ACS Nano · 2020 · 14 · 902110.1021/acsnano.0c04031 ↗
25. Yan · J. Nanobiotechnol. · 2021 · 19 · 41210.1186/s12951-021-01164-0 ↗
26. Nummelin · Adv. Mater. · 2018 · 30 · 170372110.1002/adma.201703721 ↗
27. Douglas · Nucleic Acids Res. · 2009 · 37 · 500110.1093/nar/gkp436 ↗
28. Remi · Science · 2016 · 352 · 6293
29. Zadeh · J. Comput. Chem. · 2010 · 32 · 17010.1002/jcc.21596 ↗
30. Kim · Nucleic Acids Res. · 2011 · 40 · 286210.1093/nar/gkr1173 ↗
31. Doye · Methods Mol. Biol. · 2023 · 2639 · 9310.1007/978-1-0716-3028-0_6 ↗
32. Green · Biophys. J. · 2006 · 91 · 296610.1529/biophysj.106.084681 ↗
33. Gehring · Nature · 1993 · 363 · 56110.1038/363561a0 ↗
34. Wang · Angew. Chem., Int. Ed. · 2015 · 54 · 109810.1002/anie.201404652 ↗
35. Sun · Curr. Opin. Struct. Biol. · 1996 · 6 · 32710.1016/S0959-440X(96)80051-0 ↗
36. Gilbert · Curr. Opin. Struct. Biol. · 1999 · 9 · 30510.1016/S0959-440X(99)80041-4 ↗
37. E.Wang and J.Feigon , Oxford Handbook of Nucleic Acid Structures , Oxford University Press , New York , 1999 , pp. 355–38810.1093/oso/9780198500384.003.0012 ↗
38. Burge · Nucleic Acids Res. · 2006 · 34 · 540210.1093/nar/gkl655 ↗
39. Li · J. Am. Chem. Soc. · 2009 · 131 · 1508210.1021/ja9051075 ↗
40. Asanuma · Angew. Chem., Int. Ed. · 1999 · 38 · 239310.1002/(SICI)1521-3773(19990816)38:16<2393::AID-ANIE2393>3.0.CO;2-7 ↗
41. Ogasawara · Nucleic Acids Symp. Ser. · 2008 · 52 · 36910.1093/nass/nrn186 ↗
42. Asanuma · ChemBioChem · 2001 · 2 · 3910.1002/1439-7633(20010105)2:1<39::AID-CBIC39>3.0.CO;2-E ↗
43. Liang · Nucleic Acids Symp. Ser. · 2000 · 44 · 27710.1093/nass/44.1.277 ↗
44. Wang · Analyst · 2021 · 146 · 260010.1039/D1AN00275A ↗
45. Keijzer · Chem. Commun. · 2021 · 57 · 1296010.1039/D1CC05446E ↗
46. Li · Chem. Commun. · 2009 · 45 · 58010.1039/B815814B ↗
47. Li · Anal. Chem. · 2009 · 81 · 214410.1021/ac900188y ↗
48. Yang · J. Am. Chem. Soc. · 2018 · 140 · 1765610.1021/jacs.8b09867 ↗
49. Zhao · J. Am. Chem. Soc. · 2019 · 141 · 705610.1021/jacs.9b01931 ↗
50. Wei · Angew. Chem., Int. Ed. · 2020 · 59 · 596510.1002/anie.201911712 ↗
51. Wang · Angew. Chem., Int. Ed. · 2019 · 58 · 738010.1002/anie.201902714 ↗
52. Wang · ACS Nano · 2019 · 13 · 585210.1021/acsnano.9b01589 ↗
53. Wang · ACS Nano · 2012 · 6 · 507010.1021/nn300694v ↗
54. Gong · Angew. Chem., Int. Ed. · 2020 · 59 · 2164810.1002/anie.202008413 ↗
55. Wang · Nat. Commun. · 2025 · 16 · 24410.1038/s41467-024-55527-w ↗
56. Lee · J. Controlled Release · 2019 · 311–312 · 7410.1016/j.jconrel.2019.08.036 ↗
57. Huang · J. Nanobiotechnol. · 2018 · 16 · 3010.1186/s12951-018-0350-5 ↗
58. Ghazimoradi · J. Drug Delivery Sci. Technol. · 2023 · 88 · 10495010.1016/j.jddst.2023.104950 ↗
59. Itaya · ACS Omega · 2021 · 6 · 3159510.1021/acsomega.1c04074 ↗
60. Fu · Small · 2021 · 17 · e210122410.1002/smll.202101224 ↗
61. Li · Theranostics · 2020 · 10 · 825010.7150/thno.45803 ↗
62. Fan · Biosens. Bioelectron. · 2024 · 262 · 11654010.1016/j.bios.2024.116540 ↗
63. Alycia · Soft Matter · 2025 · 21 · 339310.1039/D5SM00124B ↗
64. Lee · ACS Appl. Mater. Interfaces · 2024 · 16 · 1539410.1021/acsami.4c01678 ↗
65. Guo · ACS Nano · 2020 · 14 · 831710.1021/acsnano.0c02329 ↗
66. Julin · ACS Nano · 2023 · 17 · 1101410.1021/acsnano.3c03438 ↗
67. Hu · ACS Appl. Mater. Interfaces · 2024 · 16 · 2923510.1021/acsami.4c03834 ↗
68. Das · Polymers · 2020 · 12 · 139710.3390/polym12061397 ↗
69. Chu · Anal. Chim. Acta · 2021 · 1157 · 33840010.1016/j.aca.2021.338400 ↗
70. Mergny · Chem. Rev. · 2020 · 120 · 1169810.1021/acs.chemrev.0c01004 ↗
71. Durot · Top. Curr. Chem. · 2014 · 354 · 3510.1007/128_2013_514 ↗
72. Goswami · Chem. Rev. · 2020 · 120 · 12510.1021/acs.chemrev.9b00159 ↗
73. Ono · Angew. Chem., Int. Ed. · 2004 · 43 · 430010.1002/anie.200454172 ↗
74. Yang · ACS Appl. Mater. Interfaces · 2021 · 13 · 4841410.1021/acsami.1c15494 ↗
75. Jouha · Small · 2021 · 17 · e210543910.1002/smll.202105439 ↗
76. Takezawa · Nat. Commun. · 2023 · 14 · 475910.1038/s41467-023-40353-3 ↗
77. Asanuma · Nat. Protoc. · 2007 · 2 · 20310.1038/nprot.2006.465 ↗
78. Liang · ChemBioChem · 2008 · 9 · 70210.1002/cbic.200700649 ↗
79. Cangialosi · Science · 2017 · 357 · 112610.1126/science.aan3925 ↗
80. Kasahara · APL Bioeng. · 2020 · 4 · 01610910.1063/1.5132929 ↗
81. Zhu · Adv. Mater. · 2020 · 32 · 190660010.1002/adma.201906600 ↗
82. Liang · ACS Appl. Mater. Interfaces · 2022 · 14 · 3838810.1021/acsami.2c10908 ↗
83. Trinh · ACS Nano · 2022 · 16 · 1454910.1021/acsnano.2c05010 ↗
84. Kim · Nature · 2023 · 619 · 7810.1038/s41586-023-06181-7 ↗
85. Su · Sci. Adv. · 2025 · 11 · eads106510.1126/sciadv.ads1065 ↗
86. Xu · Nat. Commun. · 2025 · 16 · 335210.1038/s41467-025-58650-4 ↗
87. Chen · Adv. Sci. · 2025 · e0447110.1002/advs.202504471 ↗
88. Jeon · Soft Matter · 2018 · 14 · 700910.1039/C8SM01085D ↗
89. Sato · Sarcoma · 2020 · 6 · eaba3471
90. Zhao · Nat. Mater. · 2025 · 24 · 93510.1038/s41563-025-02202-0 ↗
91. Ryssy · Angew. Chem. · 2020 · 133 · 592310.1002/ange.202014963 ↗
92. Berg · Angew. Chem., Int. Ed. · 2023 · 62 · e20231445810.1002/anie.202314458 ↗
93. Ma · Angew. Chem., Int. Ed. · 2020 · 59 · 1245510.1002/anie.202003991 ↗
94. Jeong · Adv. Drug Delivery Rev. · 2012 · 64 · 15410.1016/j.addr.2012.09.012 ↗
95. Wu · Small · 2018 · 14 · 170342610.1002/smll.201703426 ↗
96. Du · Adv. Mater. · 2022 · 35 · 220630210.1002/adma.202206302 ↗
97. Marras · Proc. Natl. Acad. Sci. U. S. A. · 2015 · 112 · 71310.1073/pnas.1408869112 ↗
98. Lallemang · Adv. Comput. Syst. · 2023 · 15 · 59714
99. Velusamy · Nat. Commun. · 2024 · 15 · 70410.1038/s41467-023-44061-w ↗
100. Song · Chem. Commun. · 2019 · 55 · 244910.1039/C8CC09717H ↗