Analytical method for the determination of the absorption coefficient of DNA-stabilized silver nanoclusters
Source abstract
Abstract
DNA-stabilized silver nanoclusters (DNA-AgNCs) are biocompatible emitters formed by silver atoms and cations encapsulated in DNA oligomers. Here, we present an analytical approach to calculate the molar absorption coefficient (ε) of these systems, which consists of combining UV-Vis spectroscopy, electrospray ionization-mass spectrometry (ESI-MS), and inductively coupled plasma-optical emission spectrometry (ICP-OES). ESI-MS enables the determination of the number of silvers bound to the DNA strands, whereas ICP-OES allows measurement of the total amount of silver in solution. The data is used to calculate the concentration of DNA-AgNCs and together with UV-Vis absorbance, allows for the calculation of ε. We compare the obtained ε with the experimental values previously determined through fluorescence correlation spectroscopy (FCS) and theoretical estimates based on the ε of the DNA itself. Finally, the experimental radiative decay rates (kf) and ε values are evaluated and compared to those typically found for organic fluorophores, highlighting the molecular-like nature of the DNA-AgNC emission.
Source: europepmc · Quality: candidate unverified · Source record ↗
Research context
OpenAlex topics: Nanocluster Synthesis and Applications · Gold and Silver Nanoparticles Synthesis and Applications · Advanced Nanomaterials in Catalysis
SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.
Affiliations
Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen, Denmark
Department of Forensic Medicine, University of Copenhagen, Frederik V's Vej 11, DK-2100 Copenhagen, Denmark
Funding
Villum Fonden · Novo Nordisk Fonden · Danmarks Frie Forskningsfond
References (39)
Show source-provided references
1. Gonzàlez-Rosell · Nanoscale Adv. · 2021 · 3 · 123010.1039/D0NA01005G ↗
2. Petty · J. Am. Chem. Soc. · 2004 · 126 · 520710.1021/ja031931o ↗
3. Malola · J. Phys. Chem. C · 2023 · 127 · 1655310.1021/acs.jpcc.3c04103 ↗
4. Patel · J. Am. Chem. Soc. · 2008 · 130 · 1160210.1021/ja804710r ↗
5. Cantor · J. Mol. Biol. · 1965 · 13 · 6510.1016/S0022-2836(65)80080-8 ↗
6. Cantor · Biopolymers · 1970 · 9 · 105910.1002/bip.1970.360090909 ↗
7. Cavaluzzi · Nucleic Acids Res. · 2004 · 32 · e1310.1093/nar/gnh015 ↗
8. Volkov · Nucleic Acids Res. · 2017 · 46 · 354310.1093/nar/gkx1185 ↗
9. O'Neill · J. Phys. Chem. C · 2011 · 115 · 2406110.1021/jp206110r ↗
10. Romolini · Adv. Opt. Mater. · 2021 · 9 · 217009410.1002/adom.202170094 ↗
11. Sun · Chem. Sci. · 2022 · 13 · 1156010.1039/D2SC03197C ↗
12. Cerretani · Angew. Chem., Int. Ed. · 2019 · 58 · 1715310.1002/anie.201906766 ↗
13. Rück · Adv. Opt. Mater. · 2024 · 12 · 230192810.1002/adom.202301928 ↗
14. Vosch · Proc. Natl. Acad. Sci. U. S. A. · 2007 · 104 · 1261610.1073/pnas.0610677104 ↗
15. Petty · J. Phys. Chem. Lett. · 2010 · 1 · 252410.1021/jz100817z ↗
16. Richards · J. Am. Chem. Soc. · 2008 · 130 · 503810.1021/ja8005644 ↗
17. Bogh · ACS Omega · 2017 · 2 · 465710.1021/acsomega.7b00582 ↗
18. Sengupta · J. Phys. Chem. C · 2008 · 112 · 1877610.1021/jp804031v ↗
19. Sharma · Chem. Commun. · 2010 · 46 · 328010.1039/b927268b ↗
20. J. R.Lakowicz , Principles of fluorescence spectroscopy , 200610.1007/978-0-387-46312-4 ↗
21. Volkov · J. Lumin. · 2016 · 172 · 17510.1016/j.jlumin.2015.12.019 ↗
22. Cerretani · Nanoscale Adv. · 2022 · 4 · 321210.1039/D2NA00325B ↗
23. Rück · Angew. Chem., Int. Ed. · 2023 · 62 · e20230976010.1002/anie.202309760 ↗
24. Cerretani · ACS Omega · 2019 · 4 · 789510.1021/acsomega.9b00614 ↗
25. Gonzàlez-Rosell · J. Am. Chem. Soc. · 2023 · 145 · 1072110.1021/jacs.3c01366 ↗
26. Maillard · Chem. Sci. · 2021 · 12 · 135210.1039/D0SC05431C ↗
27. Strickler · J. Chem. Phys. · 1962 · 37 · 81410.1063/1.1733166 ↗
28. https://www.picoquant.com/images/uploads/page/files/7351/appnote_quantfcs.pdf
29. https://eu.idtdna.com/pages/tools/oligoanalyzer
30. Clever · Angew. Chem., Int. Ed. · 2007 · 46 · 622610.1002/anie.200701185 ↗
31. Daune · Biopolymers · 1966 · 4 · 5110.1002/bip.1966.360040107 ↗
32. Yamane · Biochim. Biophys. Acta · 1962 · 55 · 60910.1016/0006-3002(62)90839-9 ↗
33. Mei · J. Org. Chem. · 2013 · 78 · 945710.1021/jo401109w ↗
34. Neacşu · Chem. Commun. · 2020 · 56 · 638410.1039/D0CC01849J ↗
35. Krause · Phys. Chem. Chem. Phys. · 2018 · 20 · 1631610.1039/C8CP02584C ↗
36. Cerretani · Chem. Sci. · 2021 · 12 · 1610010.1039/D1SC05079F ↗
37. Chen · J. Phys. Chem. Lett. · 2023 · 14 · 407810.1021/acs.jpclett.3c00764 ↗
38. Thyrhaug · Nat. Commun. · 2017 · 8 · 1557710.1038/ncomms15577 ↗
39. https://www.thermofisher.com/uk/en/home/references/molecular-probes-the-handbook/tables/fluorescence-quantum-yields-and-lifetimes-for-alexa-fluor-dyes.html