journal article·2023

Protein-mimetic peptoid nanoarchitectures for pathogen recognition and neutralization

Woojin Yang, Jiwon Seo, Jae Hong Kim

Nanoscale· Volume 15· Issue 3
Publisher page

Abstract

Recent outbreaks of both new and existing infectious pathogens have threatened healthcare systems around the world. Therefore, it is vital to detect and neutralize pathogens to prevent their spread and treat infected patients. This consideration has led to the development of biosensors and antibiotics inspired by the structure and function of antibodies and antimicrobial peptides (AMPs), which constitute adaptive and innate immunity, efficiently protecting the human body against invading pathogens. Herein, we provide an overview of recent advances in the detection and neutralization of pathogens using protein-mimetic peptoid nanoarchitectures. Peptoids are bio-inspired and sequence-defined polymers composed of repeating N-substituted glycine units. They can spontaneously fold into well-defined three-dimensional nanostructures that encode chemical information depending on their sequences. Loop-functionalized peptoid nanosheets have been constructed by mimicking antibodies containing chemically variable loops as binding motifs for their respective target pathogen. Furthermore, by mimicking the cationic amphipathic features of natural AMPs, helical peptoids and their assemblies have been developed to achieve selective anti-infective activity owing to their intrinsic ability to interact with bacterial membranes and viral envelopes. We believe that this mini-review furnishes in-depth insight into how to construct protein-like nanostructures via the self-assembly of peptoids for application in the detection of pathogens and the treatment of infectious diseases for future healthcare applications.
Source: europepmc · Quality: candidate unverified · Source record ↗

Research context

OpenAlex topics: Bacteriophages and microbial interactions · Antimicrobial Peptides and Activities · Advanced biosensing and bioanalysis techniques

SciVX discovery tags are terminology-based. OpenAlex topics are source-provided classifications.

Affiliations

Soft Hybrid Materials Research Center, Korea Institute of Science and Technology, 5 Hwarang-ro 14-gil, Seongbuk-gu, Seoul 02792, Republic of Korea

Department of Chemistry, Gwangju Institute of Science and Technology, 123 Cheomdan-gwagiro, Buk-gu, Gwangju 61005, Republic of Korea

Funding

Korea Institute of Science and Technology · National Research Council of Science and Technology · National Research Foundation of Korea

References (81)

Show source-provided references
1. Baker · Nat. Rev. Microbiol. · 2022 · 20 · 19310.1038/s41579-021-00639-z ↗
2. Liu · ACS Sens. · 2021 · 6 · 59310.1021/acssensors.0c02621 ↗
3. Antimicrobial Resistance Collaborators · Lancet · 2022 · 399 · 62910.1016/S0140-6736(21)02724-0 ↗
4. J.O'Neill , Review on Antimicrobial Resistance, https://amr-review.org/sites/default/files/160525_Final%20paper_with%20cover.pdf
5. Weis · Nature · 1988 · 333 · 42610.1038/333426a0 ↗
6. Zhou · Nature · 2020 · 579 · 27010.1038/s41586-020-2012-7 ↗
7. Yan · eLife · 2012 · 1 · e0004910.7554/eLife.00049 ↗
8. Mammen · Angew. Chem., Int. Ed. · 1998 · 37 · 275410.1002/(SICI)1521-3773(19981102)37:20<2754::AID-ANIE2754>3.0.CO;2-3 ↗
9. Bhatia · J. Am. Chem. Soc. · 2016 · 138 · 865410.1021/jacs.5b12950 ↗
10. Brogden · Nat. Rev. Microbiol. · 2005 · 3 · 23810.1038/nrmicro1098 ↗
11. Huan · Front. Microbiol. · 2020 · 11 · 58277910.3389/fmicb.2020.582779 ↗
12. Dempsey · Biochim. Biophys. Acta · 1990 · 1031 · 14310.1016/0304-4157(90)90006-X ↗
13. Kobayashi · Biochemistry · 2000 · 39 · 864810.1021/bi0004549 ↗
14. Trier · Int. J. Mol. Sci. · 2019 · 20 · 628910.3390/ijms20246289 ↗
15. Zou · Biomater. Sci. · 2020 · 8 · 497510.1039/D0BM00789G ↗
16. Miller · Bioorg. Med. Chem. Lett. · 1994 · 4 · 265710.1016/S0960-894X(01)80691-0 ↗
17. Sanborn · Biopolymers · 2002 · 63 · 1210.1002/bip.1058 ↗
18. Zuckermann · Curr. Opin. Mol. Ther. · 2009 · 11 · 299
19. Zuckermann · J. Am. Chem. Soc. · 1992 · 114 · 1064610.1021/ja00052a076 ↗
20. Culf · Molecules · 2010 · 15 · 528210.3390/molecules15085282 ↗
21. Armand · Folding Des. · 1997 · 2 · 36910.1016/S1359-0278(97)00051-5 ↗
22. Kirshenbaum · Proc. Natl. Acad. Sci. U. S. A. · 1998 · 95 · 430310.1073/pnas.95.8.4303 ↗
23. Armand · Proc. Natl. Acad. Sci. U. S. A. · 1998 · 95 · 430910.1073/pnas.95.8.4309 ↗
24. Wu · J. Am. Chem. Soc. · 2003 · 125 · 1352510.1021/ja037540r ↗
25. Wu · J. Am. Chem. Soc. · 2001 · 123 · 677810.1021/ja003154n ↗
26. Wu · J. Am. Chem. Soc. · 2001 · 123 · 295810.1021/ja003153v ↗
27. Shin · Chem. Commun. · 2014 · 50 · 446510.1039/C3CC49373C ↗
28. Shin · Org. Lett. · 2007 · 9 · 500310.1021/ol702207n ↗
29. Crapster · Biopolymers · 2011 · 96 · 60410.1002/bip.21599 ↗
30. Huang · J. Am. Chem. Soc. · 2006 · 128 · 173310.1021/ja0574318 ↗
31. Crapster · Angew. Chem., Int. Ed. · 2013 · 52 · 507910.1002/anie.201208630 ↗
32. Nam · Nat. Mater. · 2010 · 9 · 45410.1038/nmat2742 ↗
33. Kudirka · Biopolymers · 2011 · 96 · 58610.1002/bip.21590 ↗
34. Hudson · J. Phys. Chem. Lett. · 2018 · 9 · 257410.1021/acs.jpclett.8b01040 ↗
35. Hebert · Org. Biomol. Chem. · 2013 · 11 · 445910.1039/c3ob40561c ↗
36. Jin · Nat. Commun. · 2018 · 9 · 27010.1038/s41467-017-02059-1 ↗
37. Li · Chem. Rev. · 2021 · 121 · 1403110.1021/acs.chemrev.1c00024 ↗
38. Edison · Proc. Natl. Acad. Sci. U. S. A. · 2018 · 115 · 564710.1073/pnas.1800397115 ↗
39. Ling · Adv. Mater. · 2020 · 32 · e200186610.1002/adma.202001866 ↗
40. Lee · Bull. Korean Chem. Soc. · 2017 · 38 · 3810.1002/bkcs.11042 ↗
41. Lau · Chem. Commun. · 2017 · 53 · 217810.1039/C6CC09888F ↗
42. Castelletto · ACS Macro Lett. · 2020 · 9 · 49410.1021/acsmacrolett.9b01010 ↗
43. Hasan · Front. Chem. · 2020 · 8 · 41610.3389/fchem.2020.00416 ↗
44. Battigelli · ACS Nano · 2018 · 12 · 245510.1021/acsnano.7b08018 ↗
45. Kim · ACS Nano · 2020 · 14 · 18510.1021/acsnano.9b07498 ↗
46. Kim · Soft Matter · 2020 · 16 · 90710.1039/C9SM01908A ↗
47. Patch · J. Am. Chem. Soc. · 2003 · 125 · 1209210.1021/ja037320d ↗
48. Chongsiriwatana · Proc. Natl. Acad. Sci. U. S. A. · 2008 · 105 · 279410.1073/pnas.0708254105 ↗
49. Nielsen · ACS Infect. Dis. · 2022 · 8 · 53310.1021/acsinfecdis.1c00536 ↗
50. Jin · Nat. Commun. · 2016 · 7 · 1225210.1038/ncomms12252 ↗
51. Wang · Sci. Adv. · 2021 · 7 · eabg144810.1126/sciadv.abg1448 ↗
52. Bicker · Chem. Commun. · 2020 · 56 · 1115810.1039/D0CC04704J ↗
53. Culf · Biopolymers · 2019 · 110 · e2328510.1002/bip.23285 ↗
54. Olivier · ACS Nano · 2013 · 7 · 927610.1021/nn403899y ↗
55. Sanii · J. Am. Chem. Soc. · 2011 · 133 · 2080810.1021/ja206199d ↗
56. Nicaise · Protein Sci. · 2004 · 13 · 188210.1110/ps.03540504 ↗
57. Koide · Proc. Natl. Acad. Sci. U. S. A. · 2007 · 104 · 663210.1073/pnas.0700149104 ↗
58. Murray · Langmuir · 2019 · 35 · 1367110.1021/acs.langmuir.9b02557 ↗
59. Karlsson · Adv. Exp. Med. Biol. · 2001 · 491 · 43110.1007/978-1-4615-1267-7_28 ↗
60. Taube · J. Virol. · 2009 · 83 · 409210.1128/JVI.02245-08 ↗
61. Koehbach · Trends Pharmacol. Sci. · 2019 · 40 · 51710.1016/j.tips.2019.04.012 ↗
62. Haffner · Curr. Opin. Colloid Interface Sci. · 2018 · 38 · 5610.1016/j.cocis.2018.09.002 ↗
63. Sancho-Vaello · Sci. Rep. · 2017 · 7 · 1537110.1038/s41598-017-14206-1 ↗
64. Engelberg · Nat. Commun. · 2020 · 11 · 389410.1038/s41467-020-17736-x ↗
65. Lund · Macromolecules · 2013 · 46 · 162510.1021/ma301310h ↗
66. Molchanova · Sci. Rep. · 2020 · 10 · 1480510.1038/s41598-020-71771-8 ↗
67. Diamond · Pharmaceuticals · 2021 · 14 · 30410.3390/ph14040304 ↗
68. Nam · ACS Infect. Dis. · 2020 · 6 · 273210.1021/acsinfecdis.0c00356 ↗
69. Salas-Ambrosio · Polym. Chem. · 2022 · 13 · 60010.1039/D1PY01529J ↗
70. Shukla · Int. J. Mol. Sci. · 2021 · 22 · 896310.3390/ijms22168963 ↗
71. Fisher · ACS Comb. Sci. · 2016 · 18 · 28710.1021/acscombsci.6b00039 ↗
72. Green · ACS Infect. Dis. · 2022 · 8 · 31010.1021/acsinfecdis.1c00449 ↗
73. Chio · Nano Lett. · 2019 · 19 · 756310.1021/acs.nanolett.8b04955 ↗
74. Ma · Nano Lett. · 2021 · 21 · 163610.1021/acs.nanolett.0c04285 ↗
75. Seo · Bioconjugate Chem. · 2012 · 23 · 106910.1021/bc300091d ↗
76. Czyzewski · PLoS One · 2016 · 11 · e013596110.1371/journal.pone.0135961 ↗
77. Nam · Bioconjugate Chem. · 2018 · 29 · 166910.1021/acs.bioconjchem.8b00148 ↗
78. Yang · Org. Biomol. Chem. · 2021 · 19 · 654610.1039/D1OB00926E ↗
79. Wang · ACS Appl. Bio Mater. · 2020 · 3 · 603910.1021/acsabm.0c00657 ↗
80. Roberts · Sens. Biosens. Res. · 2021 · 32 · 100424
81. Greco · Sci. Rep. · 2019 · 9 · 836110.1038/s41598-019-44436-4 ↗